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AT5G27230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Frigida-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Frigida-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP1UeggNOG:ENOG41118RDEMBL:AF007271EMBL:AY735691
EMBL:CP002688EnsemblPlants:AT5G27230EnsemblPlants:AT5G27230.1entrez:832781
GeneID:832781Genevisible:Q5XV31GO:GO:0009908GO:GO:0030154
Gramene:AT5G27230.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF13HOGENOM:HOG000140272
InParanoid:Q5XV31InterPro:IPR012474iPTMnet:Q5XV31KEGG:ath:AT5G27230
ncoils:CoilOMA:LCLIDESPaxDb:Q5XV31Pfam:PF07899
Pfam:Q5XV31PhylomeDB:Q5XV31PIR:T01798PRIDE:Q5XV31
PRO:PR:Q5XV31ProteinModelPortal:Q5XV31Proteomes:UP000006548RefSeq:NP_198075.1
STRING:3702.AT5G27230.1TAIR:AT5G27230UniGene:At.51070UniProt:Q5XV31
Coordinates (TAIR10) chr5:+:9584255..9587838
Molecular Weight (calculated) 106579.00 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.50
Length 948 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)