AT5G08600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : U3 ribonucleoprotein (Utp) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2786298..2789736 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93476.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||
| Length | 822 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGGEKRKSS FKNLANAKKR RTGPHLPSSI LKTIANEKRP LNSDEGDDEI DSAYGDFYEY EEGVPEEESR KNNRYERVVN YEFELAEDCE DENVESEDDD 101: DDDDDDDDDR HSRMLKNVTE LPISAFQGES KNKRVVFTEP YPESEFNPTR DVLEGKSLTT IDDFMEPLQG LHGNSQLSNM ISRMRKDTQS LVHAPLPKPE 201: QERLERDVAN ELVYKGFDIW VPLVKRNREA PTIYFNQDVN VGYSTVGAIA SQFHPRTEFE MKMASLLDDH EILEAHKEDG ARLLEFNEVS MEDHIKRRNH 301: VAKMRSMLFR VDLKHKRIKQ IKSKTYHRLK NKDLNQSGVG AFMEPAMAKE EAKKQEARRV KERMTLKHKN TGQWAKRMLS RGLNRKYDVT QAALSKQLQI 401: HATLSRKMNS TKDESSSDEE DLNDGSDQDT SKLIAEAKEK ILKTVDDDEV PISRLMSLPF MARAVKKKNE EAKEEGKRDI EELEKFGGAE TSKKSTNVVG 501: RRVFGAEAPK ESEKESDNLF DNSDSSDNDM EDNELEAVKD NASPARNTET IMEAEKLDDI AGNPASKTTF DVALYASGSW KKMTGCKNAE SKKASKTHVP 601: ISQSQDKKES SDSESDDSES DDSESEAEQM VDGILTCGSK ETYEIPCQAE LVSRAFAGDD VEGDFEKDKQ EVLNQEVPEP EKPVQVAGWG HWTNNQNKRG 701: LPSRIVREHE EAKKTREQAL RKRKDASFKH VIISEKVDKK AEKLQTKSLP YPYTSKEVFE QSMRMPIGPE FNPTTIVGVL NRPEVVKKAG VIIKPVKFEE 801: VNPNDEHPRS HQKQKPKKKG GK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)