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AT5G25910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 52
Curator
Summary (TAIR10)
putative disease resistance protein induced by chitin oligomers.
Computational
Description (TAIR10)
receptor like protein 52 (RLP52); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response to fungus, response to chitin, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT5G25930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AF149413EMBL:CP002688
EnsemblPlants:AT5G25910EnsemblPlants:AT5G25910.1entrez:832660Gene3D:3.80.10.10
GeneID:832660GO:GO:0010200GO:GO:0016021GO:GO:0050832
Gramene:AT5G25910.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF37HOGENOM:HOG000116562
InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT5G25910OMA:IPRCIANPfam:PF08263Pfam:PF13855
PhylomeDB:Q7FZR1Proteomes:UP000006548RefSeq:NP_197963.1SMART:SM00369
SMR:Q7FZR1STRING:3702.AT5G25910.1SUPFAM:SSF52058TAIR:AT5G25910
tair10-symbols:AtRLP52tair10-symbols:RLP52TMHMM:TMhelixUniGene:At.30884
UniProt:Q7FZR1
Coordinates (TAIR10) chr5:+:9038860..9041377
Molecular Weight (calculated) 90361.70 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.09
Length 811 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFLPLLFIF FFLTSIPFPA FSQYNDRSTL LNLKRDLGDP LSLRLWNDTS SPCNWPRITC TAGNVTEINF QNQNFTGTVP TTICNFPNLK SLNLSFNYFA
101: GEFPTVLYNC TKLQYLDLSQ NLFNGSLPDD INRLAPKLKY LDLAANSFAG DIPKNIGRIS KLKVLNLYMS EYDGTFPSEI GDLSELEELQ LALNDKFTPV
201: KLPTEFGKLK KLKYMWLEEM NLIGEISAVV FENMTDLKHV DLSVNNLTGR IPDVLFGLKN LTELYLFAND LTGEIPKSIS AKNLVHLDLS ANNLNGSIPE
301: SIGNLTNLEL LYLFVNELTG EIPRAIGKLP ELKELKLFTN KLTGEIPAEI GFISKLERFE VSENQLTGKL PENLCHGGKL QSVIVYSNNL TGEIPESLGD
401: CETLSSVLLQ NNGFSGSVTI SNNTRSNNNF TGKIPSFICE LHSLILLDLS TNKFNGSIPR CIANLSTLEV LNLGKNHLSG SIPENISTSV KSIDIGHNQL
501: AGKLPRSLVR ISSLEVLNVE SNKINDTFPF WLDSMQQLQV LVLRSNAFHG SINQNGFSKL RIIDISGNHF NGTLPLDFFV NWTAMFSLGK IEDQYMGTNY
601: MRTNYYSDSI VVMIKGIALE MVRILNTFTT IDFSGNKFEG EIPRSVGLLK ELHVLNLSNN GFTGHIPSSM GNLIELESLD VSQNKLSGEI PPELGKLSYL
701: AYMNFSQNQF VGLVPGGTQF QTQPCSSFAD NPRLFGLSLE RVCVDIHKKT PQQSEMPEPE EDEEEVMNWT AAAIGSIPGI SIGLTMGYIL VSYKPEWLMN
801: SGRNKRRIKP I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)