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AT1G51270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : structural molecules;transmembrane receptors;structural molecules
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 2812 Blast hits to 2401 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 192; Plants - 2224; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JRXUeggNOG:ENOG410YMM9EMBL:AC006085EMBL:BT015497
EMBL:CP002684EnsemblPlants:AT1G51270EnsemblPlants:AT1G51270.1entrez:841550
ExpressionAtlas:Q9SYC9Gene3D:2.60.40.360Gene3D:3.40.50.10140GeneID:841550
Genevisible:Q9SYC9GO:GO:0007165hmmpanther:PTHR32009hmmpanther:PTHR32009:SF4
InParanoid:Q9SYC9InterPro:IPR000157InterPro:IPR000535InterPro:IPR008962
PaxDb:Q9SYC9Pfam:PF00635Pfam:PF01582Pfam:Q9SYC9
Pfscan:PS50104Pfscan:PS50202PIR:E96550PRO:PR:Q9SYC9
PROSITE:PS50104PROSITE:PS50202ProteinModelPortal:Q9SYC9Proteomes:UP000006548
RefSeq:NP_175538.3SMART:SM00255SMR:Q9SYC9STRING:3702.AT1G51270.3
SUPFAM:SSF49354SUPFAM:SSF52200TAIR:AT1G51270UniGene:At.50948
UniProt:Q9SYC9
Coordinates (TAIR10) chr1:+:19007577..19010411
Molecular Weight (calculated) 64410.50 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.18
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTDELLTFD HVDIRFPIEL NKQGSCSLNL TNKTDNYVAF KAQTTKPKMY CVKPSVGVVL PRSSCEVLVV MQALKEAPAD RQCKDKLLFQ CKVVEPGTMD
101: KEVTSEMFSK EAGHRVEETI FKIIYVAPPQ PQSPVQEGLE DGSSPSASVS DKGNASEVFV GPSVGIVDLI RMSDELLIID PVDVQFPIEL NKKVSCSLNL
201: TNKTENYVAF KAKTTNAKKY YVRPNVGVVL PRSSCEVLVI MQALKEAPAD MQCRDKLLFQ CKVVEPETTA KDVTSEMFSK EAGHPAEETR LKVMYVTPPQ
301: PPSPVQEGTE EGSSPRASVS DNGNASEAFV DMLRSLLVPL FSNAASSTDD HGITLPQYQV FINFRGDELR NSFVGFLVKA MRLEKINVFT DEVELRGTNL
401: NYLFRRIEES RVAVAIFSER YTESCWCLDE LVKMKEQMEQ GKLVVVPVFY RLNATACKRF MGAFGDNLRN LEWEYRSEPE RIQKWKEALS SVFSNIGLTS
501: DIRRYNLINK NMDHTSEFLY IVLILNFFSE ISDMTGLTTS YQFLLMMKSN LISYDIYIYP TKFCVNVFIG V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)