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AT5G25770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.732
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Acetyl xylan esterase (InterPro:IPR008391); Has 1590 Blast hits to 1588 proteins in 559 species: Archae - 54; Bacteria - 1372; Metazoa - 0; Fungi - 31; Plants - 36; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIIUeggNOG:ENOG4110XAAEMBL:AY136310EMBL:BT008745
EMBL:CP002688EnsemblPlants:AT5G25770EnsemblPlants:AT5G25770.1entrez:832646
ESTHER:arath-AT5G25770ExpressionAtlas:Q8L7E1Gene3D:3.40.50.1820GeneID:832646
GO:GO:0016787Gramene:AT5G25770.1hmmpanther:PTHR17630hmmpanther:PTHR17630:SF54
InterPro:IPR000073InterPro:IPR029058MEROPS:S09.A06Pfam:PF12695
Pfam:PF12697PhylomeDB:Q8L7E1Proteomes:UP000006548RefSeq:NP_197949.2
STRING:3702.AT5G25770.3SUPFAM:SSF53474TAIR:AT5G25770UniGene:At.20548
UniGene:At.30893UniProt:Q8L7E1
Coordinates (TAIR10) chr5:-:8969308..8971389
Molecular Weight (calculated) 40807.80 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.41
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPITQPQM FRLQFLRLLH SRRSPQVPLI ADSSNPIENP LFQADVPSTT AIESCPKENI GKLKDMLKEE NIHLHTEDSE QGKLPLLILS LKERSEEKRP
101: AIVFMHGTNT NKEWLRPWLE AYASRGYVAI GLDSRYHGER ADCKTAYRDA LISSWRNGNT MPFIFDTVWD LIKLAEYLTQ RDDIDPKKIG ITGISLGGMH
201: AWFAAAADTR YSVVVPLIGV QGFRWAIEND EWEARVNSIK PLFEEARIDL GKNIIDKELV EKVWNRIAPG LASKFDSPYS LPVIAPRPLY ILNGANDPRC
301: PLGGLELALK RAEKAYKETA SPGNFKFKAE DGVGHEATSF MIKESSDWFD KFLKQEDMTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)