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AT5G25140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 71, subfamily B, polypeptide 13
Curator
Summary (TAIR10)
putative cytochrome P450
Computational
Description (TAIR10)
cytochrome P450, family 71, subfamily B, polypeptide 13 (CYP71B13); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ytochrome p450, family 71, subfamily B, polypeptide 11 (TAIR:AT5G25120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G25140-MONOMEREC:1.14.-.-eggNOG:COG2124eggNOG:KOG0156
EMBL:AC005964EMBL:AK227044EMBL:CP002688EnsemblPlants:AT5G25140
EnsemblPlants:AT5G25140.1entrez:832585Gene3D:1.10.630.10GeneID:832585
Genevisible:P58050GO:GO:0005506GO:GO:0016020GO:GO:0016021
GO:GO:0016709GO:GO:0020037GO:GO:0044550GO:GO:0098542
Gramene:AT5G25140.1hmmpanther:PTHR24298hmmpanther:PTHR24298:SF144HOGENOM:HOG000218629
InParanoid:P58050InterPro:IPR001128InterPro:IPR002401InterPro:IPR017972
iPTMnet:P58050KEGG:ath:AT5G25140KO:K00517ncoils:Coil
OMA:GHTITWVPaxDb:P58050Pfam:P58050Pfam:PF00067
PhylomeDB:P58050PRIDE:P58050PRINTS:PR00385PRINTS:PR00463
PRO:PR:P58050PROSITE:PS00086ProteinModelPortal:P58050Proteomes:UP000006548
RefSeq:NP_197896.1scanprosite:PS00086SMR:P58050STRING:3702.AT5G25140.1
SUPFAM:SSF48264TAIR:AT5G25140tair10-symbols:CYP71B13TMHMM:TMhelix
UniGene:At.30926UniProt:P58050
Coordinates (TAIR10) chr5:+:8672989..8674557
Molecular Weight (calculated) 56393.10 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.10
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLWYIIVVF VFFASIFIAK NTRKTKKNLP PGPPRLPIIG NLHQLGSKPH RSMFKLSEKY GPLVYLKLGK VPSVVASTPE TVKDVLKTFD KDCCSRAFLT
101: YPARISYNLK DLAFAPYSKY WKAVRKMTVV ELYTAKRVKS FRNIREEEVA SFVEFIKHSA SLEEIVNLNQ TLVKLSGSVI CRVGFGINLE GSKLENTYEE
201: VIHGTMEVLG SFAASDYFPV IGGIIDRITG LHNKCEKVFK GTDSFFDHCI KHHLEDGGSK DDIVDLLLKV ERGEIGLGEF QFTRNHTKGI LLDILLAGVD
301: TSGHTITWVM THLIKNPRVM KKAQAEVREV IKNKDNITEE DIEGLEYLKM VVKETLRINP LVPLLTPREA SKDVKIGGYN IPKKTWIHVN IWAIHRNPNV
401: WKDPEAFIPE RFMDNQIDYK GLNFELLPFG SGRRICPGIG MGMALIHLTL INLLYRFDWK LPEGMEVEDV DLEESYGLVC PKKVPLELIP VLTQWT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)