AT5G15920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural maintenance of chromosomes 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5196210..5199559 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121448.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1053 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSERRAKRPK ISRGEDDFLP GNIIEIELHN FMTFNHLVCK PGSRLNLVIG PNGSGKSSLV CAIALCLGGE PQLLGRATSV GAYVKRGEDS GYVKISLRGN 0101: TREENLTIFR KIDTRNKSEW MFNGSTVSKK DIVEIIQKFN IQVNNLTQFL PQDRVCEFAK LTPVQLLEET EKAVGDPQLP VHHRALVEKS RDLKQLERAV 0201: AKNGETLNQL KALVDEQEKD VERVRQRELF LTKVDSMKKK LPWLKYDMKK AEYMDAKKRM KEAEKKLDEA AKNLNSMKEP IEKQKKEKAE TDSKCKKVKN 0301: LMDANGRNRC HLLEKEDEAD ARVVATYKEL EELKKQEEHR QERILKATED LVAAERELQN LPVYERPVAK LEELSSQVTE LHHSINGKKN QKEDNEKLLS 0401: QKRYTLRQCV DKLKDMENAN NKLLKALANS GADRIFDAYQ WVQQNRHEFK REVYGPVLVE VNVPNRENAC FLEGHVSFYI WKSFITQDPE DRDLLVKNLK 0501: RFDVPVLNYV GNSGNQKAPF HISDQMRSLG IHARLDQIFD APDAVKEVLN SQFGLEDSYI GSKITDQRAE EVYKLGIKDF WTPDNHYRWS SSRYGGHSSA 0601: SVDSVYQSRL LLCGVDVGEL EKLRSRKEEL EDSILFMEET HKSLQTEQRR LEEEAAKLHK EREEIVNVSY LEKKKRRELE SRYQQRKTKL ESLEQEEDMD 0701: ASVAKLIDQA SRANADRYTY AINLKKLLVE AVAHKWSYAE KHMASIELER KIRESEINIK QYEKTAQQLS LAVEYCKKEV EGKQQRLATA KRDAESVATI 0801: TPELKKEFME MPTTVEELEA AIQDNLSQAN SILFINENIL QEYEHRQSQI YTISTKLETD KRDLSICMKE IDSLKEKWLP TLRQLVGQIN ETFSHNFQEM 0901: AVAGEVSLDE RDTDFDQYGI HIKVKFRESG QLQVLSSHHQ SGGERSVSTI LYLVSLQDLT NCPFRVVDEI NQGMDPINER KMFQQLVRAA SQPNTPQCFL 1001: LTPKLLPELE YSEACSILNI MNGPYIAEPS KVWSLGDSWG SLNRRRTEAS QCS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)