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AT3G07610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor jumonji (jmjC) domain-containing protein
Curator
Summary (TAIR10)
IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase.
Computational
Description (TAIR10)
increase in bonsai methylation 1 (IBM1); CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 4122 Blast hits to 1300 proteins in 255 species: Archae - 5; Bacteria - 1758; Metazoa - 460; Fungi - 93; Plants - 912; Viruses - 8; Other Eukaryotes - 886 (source: NCBI BLink).
Protein Annotations
EC:1.14.11.-eggNOG:ENOG410XTAAeggNOG:KOG1356EMBL:AC009176
EMBL:CP002686EnsemblPlants:AT3G07610EnsemblPlants:AT3G07610.1entrez:819952
ExpressionAtlas:Q9SSE9GeneID:819952Genevisible:Q9SSE9GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0032454GO:GO:0033169
GO:GO:0046872GO:GO:0051213GO:GO:0060969hmmpanther:PTHR12549
hmmpanther:PTHR12549:SF16HOGENOM:HOG000243122InterPro:IPR003347iPTMnet:Q9SSE9
ncoils:CoilPaxDb:Q9SSE9Pfam:PF02373Pfam:Q9SSE9
Pfscan:PS51184PhylomeDB:Q9SSE9PRIDE:Q9SSE9PRO:PR:Q9SSE9
PROSITE:PS51184ProteinModelPortal:Q9SSE9Proteomes:UP000006548Reactome:R-ATH-983231
RefSeq:NP_187418.1SMART:SM00558SMR:Q9SSE9STRING:3702.AT3G07610.3
SUPFAM:SSF51197TAIR:AT3G07610tair10-symbols:IBM1UniGene:At.18334
UniProt:Q9SSE9
Coordinates (TAIR10) chr3:+:2426148..2432876
Molecular Weight (calculated) 116259.00 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.76
Length 1027 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSVEEEGVV RVEEENGRGG LRRHRRVSTK LANYVDPPTD DEEDGGPKRK GKRGGNRAPK KTPKKDEEMQ KNEIDEANRV TGLVKEKRAA TKILNRKDSI
0101: IEVGEASGSM PKEVKGIRIG KRKGEIDGEI PTKPGKKPKT TVDPRIIGYR PDNMCHQCQK SDRIVERCQT CNSKRYCHPC LDTWYPLIAK EDVAKKCMFC
0201: SSTCNCRACL RLDTKLKGIN SNLIVSEEEK VQASKFILQS LLPHLKGIND EQVAEKEVEA KIYGLKFEEV RPQDAKAFPD ERLYCDICKT SIYDLHRNCK
0301: SCSFDICLSC CLEIRNGKAL ACKEDVSWNY INRGLEYEHG QEGKVIEKPA NKLDDKLKDK LDGKPDDKPK GKPKGRPKGK PDDKPKGKLK GKQDDKPDDK
0401: PDEKPVNTDH MKYPSLWKAN EAGIITCCCG AGELVLKRLL PDGWISELVN RVEKTAEAGE LLNLPETVLE RCPCSNSDRH IDIDSCNLLK AACREGSEDN
0501: YLYSPSVWDV QQDDLKHFQH HWVKGEPVIV RNVLEATSGL SWEPMVMHRA CRQISHVQHG SLKDVVAVDC LDFCEVKVNL HEFFTGYTDG RYDRMGWPLV
0601: LKLKDWPPAK VFKDNLPRHA EEFLCSLPLK HYTHPVNGPL NLAVKLPQNC LKPDMGPKTY VASGFAQELG RGDSVTKLHC DMSDAVNILT HISEVPNMQP
0701: GIGNLKKKHA EQDLKELYSS VANKEEMMEI LENSRQQVQN VETDDGALWD IFRREDIPKL ESYIEKHHKE FRHLYCCPVS QVVHPIHDQN FYLTRYHIMK
0801: LKEEYGIEPW TFNQKLGDAV LIPVGCPHQV RNLKSCNKVA LDFVSPENVS ECLRLTKQYR LLPPNHFAKE DKLGVKKMIV HAVDKALRDL SGEKSPEPEE
0901: KKQNMRGPKK GAAKAVAKAL KDLSPSEKKS SEAAEEEISN GIVNAIDKGL KDLPPSEEKS SEAKVEISNG IVSAMDKDLE HISSSEKKST EEEGVKRPNI
1001: VRTYERRKKL GSEVTNAYID RLEMEKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)