AT5G14230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4591883..4595775 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81399.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||
| Length | 751 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVFSGRQVV PMDYEAEVSQ RLLEAILDGD FKTASDCVSD PLVDVNFVGA VSLKTRRSEV VLRDESPSEV RVEYEEFKTD VTALFLAVNF GNAALVKELL 101: NIGADVNQKL FRGFATTVAV REGHFDVFEI LLKAGASQPA CEEALVGASC HGRSRFVELL MGTDLIRPQV AVHALATACC RGFVDVVGTL LKCGVDANST 201: DRLLLQSSKP SLYTNVDCTA LVAAIVNRQV SAVRVLLQAG VKTDIMVRLG AWSWDTNTGE EFRVGAGVAE PYPLTWCAVE YFETSGDILR LLLKLQSPNA 301: LHNGRTLLHH AVLCGNKAAV SVLLDCGADP EAPIKTSRGI ELRPIHIAAR DGSVEIIQQL VGFGCDINSK NDVGNTALLI SIKHKHPECV KVLALDGADF 401: GLVNKFGHSA VSIAESNKWS LGLERVILEL IRFGVVPHSS NASVFSPLLY GAQAGDAEAL KALVKAQDIY LDYQDEEGFS AAMLAAMNGH VEAFRVLVYA 501: GADVKLYNNS GDTVVSLSEQ NGNRDVIEKV MLEFALEKDS RNMAGGFYAL HCAARRGDVK AVKLLSGKGY SLDIPDGDGY TPLMLAAREG HGHMCEYLIS 601: CGANCNAKNG RGEKLLDLAT GDAEKVIRNE LSRRFVIEGS SVMKHTKGGK GKKHGKGLRM LESSGVLSWG KSRKRTVVCK EVEIGMSQRF RKNRKGKGDG 701: AEEEGIFRVV TTENKEVHFV CEGGLVCAEM WVRGIRLVTR ETICGRTQTQ N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)