AT5G55180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22388834..22390550 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49364.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVFVLSLLI LSSFSAIPFT YADSGMIGVN YGRIADNLPA PEKVVELLKT QGINRIKLYD TETTVLTALA NSGIKVVVSL PNENLASAAA DQSYTDTWVQ 101: DNIKKYIPAT DIEAIAVGNE VFVDPRNTTT YLVPAMKNVQ SSLVKFNLDK SIKISSPIAL SALASSYPPS AGSFKPELIE PVIKPMLDLL RKTSSHLMVN 201: AYPFFAYAAN ADKISLDYAL FKENAGNVDS GNGLKYNSLL DAQIDAVFAA MSAVGFNDVK LVVTETGWPS AGDENEIGAG SANAAAYNGG LVKRVLTGNG 301: TPLKPKEPLN VYLFALFNEN QKTGPTSERN YGLFYPNENK VYDVSLNGKS TPVNDNKEKV VPVKPSLVGQ TWCVANGKTT KEKLQEGLDY ACGEGGADCR 401: PIQPGATCYN PESLEAHASY AFNSYYQKNA RGVGTCNFGG AAYVVSQPPK YGKCEFPTGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)