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AT4G35730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of Vps4 activity in the MVB pathway protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 794 Blast hits to 754 proteins in 186 species: Archae - 0; Bacteria - 4; Metazoa - 200; Fungi - 205; Plants - 312; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YG52eggNOG:KOG2027EMBL:CP002687EnsemblPlants:AT4G35730
EnsemblPlants:AT4G35730.1entrez:829726GeneID:829726GO:GO:0005739
GO:GO:0015031Gramene:AT4G35730.1hmmpanther:PTHR12161hmmpanther:PTHR12161:SF19
InParanoid:F4JNS8InterPro:IPR005061KEGG:ath:AT4G35730KO:K19476
ncoils:CoilOMA:RECPADLPANTHER:PTHR12161PaxDb:F4JNS8
Pfam:PF03398PRIDE:F4JNS8ProteinModelPortal:F4JNS8Proteomes:UP000006548
RefSeq:NP_195298.2SMR:F4JNS8STRING:3702.AT4G35730.1TAIR:AT4G35730
UniGene:At.31388UniProt:F4JNS8
Coordinates (TAIR10) chr4:+:16931111..16933241
Molecular Weight (calculated) 52201.40 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.74
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)