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AT2G45080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclin p3;1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cyclin p3;1 (cycp3;1); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin p3;2 (TAIR:AT3G60550.1); Has 1274 Blast hits to 1274 proteins in 212 species: Archae - 0; Bacteria - 18; Metazoa - 174; Fungi - 605; Plants - 231; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).
Protein Annotations
BioGrid:4451eggNOG:ENOG4111TTKeggNOG:KOG1674EMBL:AY074650
EMBL:CP002685EnsemblPlants:AT2G45080EnsemblPlants:AT2G45080.1entrez:819115
Gene3D:1.10.472.10GeneID:819115Genevisible:Q9SHD3GO:GO:0000079
GO:GO:0007049GO:GO:0051301Gramene:AT2G45080.1hmmpanther:PTHR15615
hmmpanther:PTHR15615:SF15HOGENOM:HOG000239309InParanoid:Q9SHD3IntAct:Q9SHD3
InterPro:IPR012389InterPro:IPR013763InterPro:IPR013922KEGG:ath:AT2G45080
OMA:CHETPDMPaxDb:Q9SHD3Pfam:PF08613Pfam:Q9SHD3
PhylomeDB:Q9SHD3PIR:C84886PIRSF:PIRSF027110PRIDE:Q9SHD3
PRO:PR:Q9SHD3ProteinModelPortal:Q9SHD3Proteomes:UP000006548RefSeq:NP_182034.1
SMR:Q9SHD3STRING:3702.AT2G45080.1SUPFAM:SSF47954TAIR:AT2G45080
tair10-symbols:cycp3;1UniGene:At.37014UniProt:Q9SHD3
Coordinates (TAIR10) chr2:+:18591688..18592443
Molecular Weight (calculated) 25820.10 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.24
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)