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AT4G27970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SLAC1 homologue 2
Curator
Summary (TAIR10)
Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.
Computational
Description (TAIR10)
SLAC1 homologue 2 (SLAH2); FUNCTIONS IN: transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 3 (TAIR:AT5G24030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14197eggNOG:ENOG410IIDVeggNOG:ENOG4111I0DEMBL:AF367337
EMBL:AL035524EMBL:AL161572EMBL:BT002238EMBL:CP002687
EnsemblPlants:AT4G27970EnsemblPlants:AT4G27970.1entrez:828910GeneID:828910
Genevisible:Q9ASQ7GO:GO:0005886GO:GO:0006873GO:GO:0008308
GO:GO:0016021Gramene:AT4G27970.1hmmpanther:PTHR31269hmmpanther:PTHR31269:SF2
HOGENOM:HOG000237712InParanoid:Q9ASQ7InterPro:IPR004695InterPro:IPR030183
KEGG:ath:AT4G27970OMA:WTKISASPANTHER:PTHR31269:SF2PaxDb:Q9ASQ7
Pfam:PF03595Pfam:Q9ASQ7PhylomeDB:Q9ASQ7PIR:T02898
PRIDE:Q9ASQ7PRO:PR:Q9ASQ7ProteinModelPortal:Q9ASQ7Proteomes:UP000006548
RefSeq:NP_567792.1SMR:Q9ASQ7STRING:3702.AT4G27970.1TAIR:AT4G27970
tair10-symbols:SLAH2TMHMM:TMhelixUniGene:At.28729UniProt:Q9ASQ7
Coordinates (TAIR10) chr4:-:13918290..13920122
Molecular Weight (calculated) 58822.80 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.10
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNPRSVSPL VSPANHSDLL ENQRQSGSGD FSRLEKRIGA RKMKFHSKSM PRGAMFLDQE ASRNFHDKRY DLFRTMSGKL ERQISNLRGK PTESSLQDHK
101: EITESLTADR YFDALQGPEL ETLKEKEKIV LPEDKTWPFL LRFPITSYGM CLGVSSQAIM WKTLATTEAE KFLHVTQVIN HVLWWISLLL LLAVSITYLF
201: KTILFFEAVR REFRHPIRVN FFFAPLISIL FLALGIPHSI ISHLPSTLWY FLMAPILFLE MKIYGQWMSG GQRRLSKVAN PTNHLSIVGN FAGALLGASM
301: GLKEGPIFFF AIGLAYYLVL FVTLYQRLPT NETLPKELHP VFFLFVAAPA VASMAWTKIS ASFDLGSRLA YFISLFLYFS LVCRINLFRG FKFSLAWWAY
401: TFPMTAVASA TIKYSDEVTG VATKILSVVM SGAATLTVIA VLGLTVMHAF VQRDLFPNDV VIAISAEQPK QKRWFKHLTK ESYGNNERCP KILDPEDNQI
501: DLESPPLVNV DSSTVQNSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)