AT5G08740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.500 plastid 0.500 ASURE: mitochondrion,plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)H dehydrogenase C1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)H dehydrogenase C1 (NDC1); FUNCTIONS IN: NADH dehydrogenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, cell wall, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 10792 Blast hits to 10785 proteins in 2211 species: Archae - 358; Bacteria - 8162; Metazoa - 316; Fungi - 520; Plants - 321; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2848752..2851323 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57021.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVLSSVSSL IPFSYGATRL TSKASLASRT SGFNLSSRWN STRNSPMLYL SRAVTNNSGT TEISDNETAP RTYSWPDNKR PRVCILGGGF GGLYTALRLE 101: SLVWPEDKKP QVVLVDQSER FVFKPMLYEL LSGEVDVWEI APRFSDLLTN TGIQFLRDRV KTLLPCDHLG VNGSEISVTG GTVLLESGFK IEYDWLVLAL 201: GAESKLDVVP GAMELAFPFY TLEDAIRVNE KLSKLERKNF KDGSAIKVAV VGCGYAGVEL AATISERLQD RGIVQSINVS KNILTSAPDG NREAAMKVLT 301: SRKVQLLLGY LVQSIKRASN LEEDEGYFLE LQPAERGLES QIIEADIVLW TVGAKPLLTK LEPSGPNVLP LNARGQAETD ETLRVKGHPR IFALGDSSSL 401: RDSNGKILPT TAQVAFQEAD FTGWNIWAAI NNRPLLPFRF QNLGEMMTLG RYDAAISPSF IEGLTLEGPI GHAARKLAYL IRLPTDEHRF MVRISWFAKS 501: AVDSIALLQS NLTKVLSGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)