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AT5G06450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G11770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15812DNASU:830533eggNOG:ENOG410JX4TeggNOG:ENOG41104AS
EMBL:AB006700EMBL:AY080689EMBL:AY117335EMBL:CP002688
EnsemblPlants:AT5G06450EnsemblPlants:AT5G06450.1entrez:830533EvolutionaryTrace:Q9FNG3
Gene3D:3.30.420.10GeneID:830533GO:GO:0003676GO:GO:0005773
GO:GO:0005774GO:GO:0008408Gramene:AT5G06450.1hmmpanther:PTHR13620
hmmpanther:PTHR13620:SF7HOGENOM:HOG000153454InParanoid:Q9FNG3InterPro:IPR002562
InterPro:IPR012337KEGG:ath:AT5G06450OMA:HRVLWSDPaxDb:Q9FNG3
PDB:1VK0PDB:2Q3SPDBsum:1VK0PDBsum:2Q3S
Pfam:PF01612Pfam:Q9FNG3PhylomeDB:Q9FNG3PRIDE:Q9FNG3
PRO:PR:Q9FNG3ProteinModelPortal:Q9FNG3Proteomes:UP000006548RefSeq:NP_196263.1
SMR:Q9FNG3STRING:3702.AT5G06450.1SUPFAM:SSF53098TAIR:AT5G06450
UniGene:At.32853UniProt:Q9FNG3
Coordinates (TAIR10) chr5:-:1967869..1968489
Molecular Weight (calculated) 23216.60 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.15
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFDGPKFK MTDGSYVQTK TIDVGSSTDI SPYLSLIRED SILNGNRAVI FDVYWDVGFP ETETKTKTSG WSLSSVKLST RNLCLFLRLP KPFHDNLKDL
101: YRFFASKFVT FVGVQIEEDL DLLRENHGLV IRNAINVGKL AAEARGTLVL EFLGTRELAH RVLWSDLGQL DSIEAKWEKA GPEEQLEAAA IEGWLIVNVW
201: DQLSDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)