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AT5G04940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SU(VAR)3-9 homolog 1
Curator
Summary (TAIR10)
Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Computational
Description (TAIR10)
SU(VAR)3-9 homolog 1 (SUVH1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET domain (InterPro:IPR003616), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2940eggNOG:KOG1082EMBL:AB493737EnsemblPlants:AT5G04940
EnsemblPlants:AT5G04940.1EnsemblPlants:AT5G04940.2entrez:830376ExpressionAtlas:C0SVN4
Gene3D:2.30.280.10GeneID:830376GO:GO:0005634GO:GO:0005694
GO:GO:0008270GO:GO:0018024Gramene:AT5G04940.1Gramene:AT5G04940.2
hmmpanther:PTHR22884hmmpanther:PTHR22884:SF383InterPro:IPR001214InterPro:IPR003105
InterPro:IPR003616InterPro:IPR007728InterPro:IPR015947InterPro:IPR025794
KEGG:ath:AT5G04940KO:K11420OMA:RENGNREPaxDb:C0SVN4
Pfam:PF00856Pfam:PF02182Pfam:PF05033Pfam:Q9FF80
Pfscan:PS50280Pfscan:PS50867Pfscan:PS50868Pfscan:PS51015
Pfscan:PS51575PhylomeDB:C0SVN4PhylomeDB:Q9FF80PRIDE:C0SVN4
PROSITE:PS50280PROSITE:PS50867PROSITE:PS50868PROSITE:PS51015
PROSITE:PS51575ProteinModelPortal:C0SVN4RefSeq:NP_196113.1RefSeq:NP_850767.1
SMART:SM00317SMART:SM00466SMART:SM00468SMR:C0SVN4
STRING:3702.AT5G04940.1SUPFAM:SSF82199SUPFAM:SSF88697TAIR:AT5G04940
tair10-symbols:SUVH1UniGene:At.8375UniProt:C0SVN4UniProt:Q9FF80
Coordinates (TAIR10) chr5:-:1454616..1456628
Molecular Weight (calculated) 74475.10 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.53
Length 670 amino acids
Sequence (TAIR10)
(BLAST)
001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)