AT2G29190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 2 (PUM2); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3838 Blast hits to 2002 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 765; Fungi - 1352; Plants - 848; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12544260..12548071 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106662.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 972 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL YRSGSAPPTV DGSVSAAGGL FSGGGGAPFL EFGGGNKGNG FGGDDEEFRK 101: DPAYLSYYYA NMKLNPRLPP PLMSREDLRV AQRLKGSSNV LGGVGDRRKV NDSQSLFSMP PGFDQRKQHE FEVEKTSASS SEWDANGLIG LPGLGIGGKQ 201: KSFADIFQAD MGHGHPVTKQ PSRPASRNTF DENVDSKNNL SPSASQGIGA PSPYSYAAVL GSSLSRNGTP DPQAIARVPS PCLTPIGSGR VSSNDKRNTS 301: NQSPFNGGLN ESSDLVNALS GMNLSGSGGL DERGQAEQDV EKVRNYMFGL QGGHNEVNQH GFPNKSDQAQ KATGLLRNSQ LRGAQGSTYN DGGGVATQYQ 401: HLDSPNYCLN NYGLNPAVAS MMANQLGTNN YSPVYENASA ASAMGFSGMD SRLHGGGYVS SGQNLSESRN LGRFSNRMMG GGTGLQSHMA DPMYHQYADS 501: LDLLNDPSMD VNFMGNSYMN MLELQRAYLG AQKSQYGVPY KSGSPNSHTD YGSPTFGSYP GSPLAHHLLP NSLVSPCSPM RRGEVNMRYP SATRNYAGGV 601: MGSWHMDASL DEGFGSSMLE EFKSNKTRGF ELAEIAGHVV EFSSDQYGSR FIQQKLETAT SDEKNMVYEE IMPHALALMT DVFGNYVIQK FFEHGLPPQR 701: RELADKLFDN VLPLSLQMYG CRVIQKAIEV VDLDQKIKMV KELDGHVMRC VRDQNGNHVV QKCIECVPEE NIEFIISTFF GNVVTLSTHP YGCRVIQRVL 801: EHCHDPDTQS KVMDEIMSTI SMLAQDQYGN YVIQHVLEHG KPDERTVIIK ELAGKIVQMS QQKFASNVVE KCLTFGGPEE REFLVNEMLG TTDENEPLQA 901: MMKDQFANYV VQKVLETCDD QQRELILGRI KVHLNALKKY TYGKHIVARV EKLVAAGERR MALQSLTQPQ MA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)