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AT4G39720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 406 Blast hits to 390 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 7; Plants - 145; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3AGeggNOG:ENOG410Z9NPEMBL:AL022605EMBL:AL161595
EMBL:BT011216EMBL:BT012147EMBL:CP002687EnsemblPlants:AT4G39720
EnsemblPlants:AT4G39720.1entrez:830127GeneID:830127Gramene:AT4G39720.1
hmmpanther:PTHR33179hmmpanther:PTHR33179:SF4HOGENOM:HOG000210029InterPro:IPR008889
KEGG:ath:AT4G39720OMA:GVIKKTKPfam:PF05678PIR:T05009
Proteomes:UP000006548RefSeq:NP_195682.1STRING:3702.AT4G39720.1TAIR:AT4G39720
UniGene:At.31070UniProt:O65659
Coordinates (TAIR10) chr4:-:18429992..18430864
Molecular Weight (calculated) 31484.90 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.84
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGNSSSMQ SSSGGGGGGE EEYDSRAADQ SISAFFDHHN NHVSSIPTPQ QNHRNLLHFD HNNNNSLIPP NYFNNNTFLP VNQQPDPISQ LDLRTSSATS
101: SLPPTNNIGV IKKTKKRSRA SRRAPTTVLT TDTSNFRAMV QEFTGIPAPP LFNNNSIVNT TRLNTFLGLS SSSPNTYNTN NLLLRPFAQK LTPATPLLSG
201: SQIQQYQNPN NGFEDMNLQA LLQAHISNPR SNEHDQFGLG MMQTPSTNPP TTTAAANGNI NTGDNGSYGG SDHEHNNDGT WLSSSSDQRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)