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AT4G37380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 33786 Blast hits to 13504 proteins in 252 species: Archae - 0; Bacteria - 14; Metazoa - 55; Fungi - 76; Plants - 33202; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G37830-MONOMERBioCyc:ARA:GQT-2007-MONOMERBioCyc:MetaCyc:AT4G37830-MONOMEReggNOG:ENOG410Z7Z7
eggNOG:KOG4197EMBL:AL035601EMBL:AL161591EMBL:CP002687
EnsemblPlants:AT4G37380EnsemblPlants:AT4G37380.1entrez:829892Gene3D:1.25.40.10
GeneID:829892Genevisible:Q9SZT8GO:GO:0003723GO:GO:0006397
GO:GO:0008270GO:GO:0009507GO:GO:1900865Gramene:AT4G37380.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF607HOGENOM:HOG000237569InParanoid:Q9SZT8
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT4G37380
OMA:CWNAMIDPaxDb:Q9SZT8Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q9SZT8Pfscan:PS51375PhylomeDB:Q9SZT8
PIR:T04732PRIDE:Q9SZT8PRO:PR:Q9SZT8PROSITE:PS51375
ProteinModelPortal:Q9SZT8Proteomes:UP000006548RefSeq:NP_195454.1SMR:Q9SZT8
STRING:3702.AT4G37380.1TAIR:AT4G37380TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.65465UniProt:Q9SZT8
Coordinates (TAIR10) chr4:-:17572040..17573938
Molecular Weight (calculated) 70100.10 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.06
Length 632 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSPLLATS LPQNQLSTTA TARFRLPPPE KLAVLIDKSQ SVDEVLQIHA AILRHNLLLH PRYPVLNLKL HRAYASHGKI RHSLALFHQT IDPDLFLFTA
101: AINTASINGL KDQAFLLYVQ LLSSEINPNE FTFSSLLKSC STKSGKLIHT HVLKFGLGID PYVATGLVDV YAKGGDVVSA QKVFDRMPER SLVSSTAMIT
201: CYAKQGNVEA ARALFDSMCE RDIVSWNVMI DGYAQHGFPN DALMLFQKLL AEGKPKPDEI TVVAALSACS QIGALETGRW IHVFVKSSRI RLNVKVCTGL
301: IDMYSKCGSL EEAVLVFNDT PRKDIVAWNA MIAGYAMHGY SQDALRLFNE MQGITGLQPT DITFIGTLQA CAHAGLVNEG IRIFESMGQE YGIKPKIEHY
401: GCLVSLLGRA GQLKRAYETI KNMNMDADSV LWSSVLGSCK LHGDFVLGKE IAEYLIGLNI KNSGIYVLLS NIYASVGDYE GVAKVRNLMK EKGIVKEPGI
501: STIEIENKVH EFRAGDREHS KSKEIYTMLR KISERIKSHG YVPNTNTVLQ DLEETEKEQS LQVHSERLAI AYGLISTKPG SPLKIFKNLR VCSDCHTVTK
601: LISKITGRKI VMRDRNRFHH FTDGSCSCGD FW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)