AT1G71460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 42264 Blast hits to 12209 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 38; Plants - 41826; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26928247..26930316 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77491.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVVSSLGIR DLPASLSVTT SLNHRPHRSD KDGAPAKSPI RPSRTRRPST SPAKKPKPFR ERDAFPSSLP LHSKNPYIIH RDIQIFARQN NLEVALTILD 101: YLEQRGIPVN ATTFSALLEA CVRRKSLLHG KQVHVHIRIN GLESNEFLRT KLVHMYTACG SVKDAQKVFD ESTSSNVYSW NALLRGTVIS GKKRYQDVLS 201: TFTEMRELGV DLNVYSLSNV FKSFAGASAL RQGLKTHALA IKNGLFNSVF LKTSLVDMYF KCGKVGLARR VFDEIVERDI VVWGAMIAGL AHNKRQWEAL 301: GLFRTMISEE KIYPNSVILT TILPVLGDVK ALKLGKEVHA HVLKSKNYVE QPFVHSGLID LYCKCGDMAS GRRVFYGSKQ RNAISWTALM SGYAANGRFD 401: QALRSIVWMQ QEGFRPDVVT IATVLPVCAE LRAIKQGKEI HCYALKNLFL PNVSLVTSLM VMYSKCGVPE YPIRLFDRLE QRNVKAWTAM IDCYVENCDL 501: RAGIEVFRLM LLSKHRPDSV TMGRVLTVCS DLKALKLGKE LHGHILKKEF ESIPFVSARI IKMYGKCGDL RSANFSFDAV AVKGSLTWTA IIEAYGCNEL 601: FRDAINCFEQ MVSRGFTPNT FTFTAVLSIC SQAGFVDEAY RFFNLMLRMY NLQPSEEHYS LVIELLNRCG RVEEAQRLAV MSSSSSLQT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)