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AT5G21970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHEPeggNOG:ENOG410YF6QEMBL:AC140977EMBL:AK227058
EMBL:AL589883EMBL:AY136447EMBL:CP002688EnsemblPlants:AT5G21970
EnsemblPlants:AT5G21970.1entrez:832257GeneID:832257GO:GO:0016787
Gramene:AT5G21970.1hmmpanther:PTHR31476hmmpanther:PTHR31476:SF8HOGENOM:HOG000239789
InterPro:IPR021099KEGG:ath:AT5G21970OMA:VAHFVRRPfam:PF11955
PhylomeDB:Q9C590Proteomes:UP000006548RefSeq:NP_680185.1TAIR:AT5G21970
UniGene:At.44995UniProt:Q9C590
Coordinates (TAIR10) chr5:+:7262071..7263420
Molecular Weight (calculated) 52981.80 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.58
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGLRCWLQF YRNGNAHNVF AIMPERNVLY GESSFRRVWV RFMTSSKRVQ DRSREKRVQE LEIATEKWKI ASKVIFLMEV LKGERDMIMT VRSFEQYRRQ
101: INLPKPHKIS DFIRKSPKLF ELYKDQRGVL WCGLTEGGED LLDEHDKLLE ENGDKAAEHV TRCLMMSVDK KLPLDKIVHF RRDFGLPLDF RINWVYNFPQ
201: HFKVVKLGDG EEYLELVSWN PAWAITELEK KTLGITEDCE HKPGMLSLAF PMKFPPSYKK MYRYRGKIEH FQKRSYLSPY ADARGLEAGS KEFDKRAIAV
301: MHELLSFTLE KRLVTDHLTH FRREFVMPQK LMRIFLKHCG IFYVSERGKR FSVFLTEGYE GPELIEKCPL ILWKEKLLKF TGYRGRKRDI QTYSDTLDME
401: ERELLESGSG DEDLSVGFEK DGDYDDVVTD DDEMDIGEVN DAYEENSKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)