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AT5G08510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G44230.1); Has 37926 Blast hits to 14003 proteins in 252 species: Archae - 2; Bacteria - 4; Metazoa - 48; Fungi - 107; Plants - 37187; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).
Protein Annotations
BioGrid:16028eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB006697
EMBL:AK226649EMBL:BT015162EMBL:CP002688EnsemblPlants:AT5G08510
EnsemblPlants:AT5G08510.1entrez:830750Gene3D:1.25.40.10GeneID:830750
Genevisible:Q9FNN7Gramene:AT5G08510.1hmmpanther:PTHR24015HOGENOM:HOG000237569
InParanoid:Q9FNN7InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G08510
OMA:FFDSMEAPaxDb:Q9FNN7Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:Q9FNN7Pfscan:PS51375PhylomeDB:Q9FNN7
PRIDE:Q9FNN7PRO:PR:Q9FNN7PROSITE:PS51375ProteinModelPortal:Q9FNN7
Proteomes:UP000006548RefSeq:NP_196468.1SMR:Q9FNN7STRING:3702.AT5G08510.1
SUPFAM:SSF48452TAIR:AT5G08510TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.24658UniProt:Q9FNN7
Coordinates (TAIR10) chr5:+:2753099..2754731
Molecular Weight (calculated) 58041.60 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.13
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGIKQLHAH CLRTGVDETK DLLQRLLLIP NLVYARKLFD HHQNSCTFLY NKLIQAYYVH HQPHESIVLY NLLSFDGLRP SHHTFNFIFA ASASFSSARP
101: LRLLHSQFFR SGFESDSFCC TTLITAYAKL GALCCARRVF DEMSKRDVPV WNAMITGYQR RGDMKAAMEL FDSMPRKNVT SWTTVISGFS QNGNYSEALK
201: MFLCMEKDKS VKPNHITVVS VLPACANLGE LEIGRRLEGY ARENGFFDNI YVCNATIEMY SKCGMIDVAK RLFEELGNQR NLCSWNSMIG SLATHGKHDE
301: ALTLFAQMLR EGEKPDAVTF VGLLLACVHG GMVVKGQELF KSMEEVHKIS PKLEHYGCMI DLLGRVGKLQ EAYDLIKTMP MKPDAVVWGT LLGACSFHGN
401: VEIAEIASEA LFKLEPTNPG NCVIMSNIYA ANEKWDGVLR MRKLMKKETM TKAAGYSYFV EVGVDVHKFT VEDKSHPRSY EIYQVLEEIF RRMKLEKSRF
501: DSLLQPEQLC I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)