AT5G08510.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.989 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G44230.1); Has 37926 Blast hits to 14003 proteins in 252 species: Archae - 2; Bacteria - 4; Metazoa - 48; Fungi - 107; Plants - 37187; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:2753099..2754731 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58041.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 511 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNGIKQLHAH CLRTGVDETK DLLQRLLLIP NLVYARKLFD HHQNSCTFLY NKLIQAYYVH HQPHESIVLY NLLSFDGLRP SHHTFNFIFA ASASFSSARP 101: LRLLHSQFFR SGFESDSFCC TTLITAYAKL GALCCARRVF DEMSKRDVPV WNAMITGYQR RGDMKAAMEL FDSMPRKNVT SWTTVISGFS QNGNYSEALK 201: MFLCMEKDKS VKPNHITVVS VLPACANLGE LEIGRRLEGY ARENGFFDNI YVCNATIEMY SKCGMIDVAK RLFEELGNQR NLCSWNSMIG SLATHGKHDE 301: ALTLFAQMLR EGEKPDAVTF VGLLLACVHG GMVVKGQELF KSMEEVHKIS PKLEHYGCMI DLLGRVGKLQ EAYDLIKTMP MKPDAVVWGT LLGACSFHGN 401: VEIAEIASEA LFKLEPTNPG NCVIMSNIYA ANEKWDGVLR MRKLMKKETM TKAAGYSYFV EVGVDVHKFT VEDKSHPRSY EIYQVLEEIF RRMKLEKSRF 501: DSLLQPEQLC I |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)