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AT4G31980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.898
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCAXeggNOG:ENOG410ZKCSEMBL:AL021636EMBL:AL161580
EMBL:CP002687EnsemblPlants:AT4G31980EnsemblPlants:AT4G31980.1entrez:829328
GeneID:829328GO:GO:0016021Gramene:AT4G31980.1hmmpanther:PTHR31549
hmmpanther:PTHR31549:SF2HOGENOM:HOG000114718InterPro:IPR004158InterPro:IPR008580
KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-
KEGG:ath:AT4G31980MEROPS:C97.A07OMA:ISKEVIYPfam:PF03140
Pfam:PF05903PhylomeDB:O49393PIR:T04647Proteomes:UP000006548
RefSeq:NP_194926.1SMART:SM01179SMR:O49393TAIR:AT4G31980
TMHMM:TMhelixUniGene:At.28548UniProt:O49393
Coordinates (TAIR10) chr4:+:15464905..15469204
Molecular Weight (calculated) 77687.80 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.22
Length 680 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCRNVSVRR KKNSGTVPVY LNVYDLTPMN VYGYWLGIGI YHSGLEVHGV EYGYGAHEKS SSGIFEVEPK KCPGFTFRKS ILVGETEMKA KEVRSFMEKL
101: SEEYQGNKYH LITRNCNHFC NHVSLKLTHK SIPSWVNRLA RLGFLCNCVL PACLNETKVK RVGKDGKLLL EGENTKKKKR KKKIRRSRSG PLSSSSSNAR
201: LDNTPTHNRS ISTGNPPLSA SPSCPLRPRL PSVASGAEDQ NPPSRYLNAS FCSEVQCHRL CFAYERMNQN EGDALVDSIK AKLAFLSSLS TKCCIYKVPN
301: KLRRLNPDAY TPRLVSFGPL HRGKEELQAM EDQKYRYLLS FIPRTNSSLE DLVRLARTWE QNARSCYAED VKLHSDEFVE MLVVDGSFLV ELLLRSHYPR
401: LRGENDRIFG NSMMITDVCR DMILIENQLP FFVVKEIFLL LLNYYQQGTP SIIQLAQRHF SYFLSRIDDE KFITEPEHFV DLLRSCYLPQ FPIKLEYTTV
501: KVDNAPEATE LHTAGVRFKP AETSSCLLDI SFADGVLKIP TIVVDDLTES LYKNIIGFEQ CRCSNKNFLD YIMLLGCFIK SPTDADLLIH SGIIVNYLGN
601: SVDVSNLFNS ISKEVIYDRR FYFSMLSENL QAYCNTPWNR WKAILRRDYF HNPWAVASVF AALLLLLLTF IQSVCSILAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)