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AT4G31350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.784
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 585 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 553; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJDDeggNOG:ENOG410YDP6EMBL:AK118612EMBL:BT002504
EMBL:BT008472EMBL:CP002687EMBL:KJ676992EnsemblPlants:AT4G31350
EnsemblPlants:AT4G31350.1EnsemblPlants:AT4G31350.2entrez:829262GeneID:829262
GO:GO:0008375GO:GO:0016021GO:GO:0016757Gramene:AT4G31350.1
Gramene:AT4G31350.2hmmpanther:PTHR31042hmmpanther:PTHR31042:SF22HOGENOM:HOG000237469
InterPro:IPR003406KEGG:ath:AT4G31350OMA:GHENKFSPfam:PF02485
PhylomeDB:Q8GS18Proteomes:UP000006548RefSeq:NP_001154280.1RefSeq:NP_194863.4
STRING:3702.AT4G31350.1TAIR:AT4G31350TMHMM:TMhelixUniGene:At.23214
UniGene:At.66654UniProt:Q8GS18
Coordinates (TAIR10) chr4:+:15213133..15215651
Molecular Weight (calculated) 43755.90 Da
IEP (calculated) 8.94
GRAVY (calculated) -0.22
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MSESRQRPPF KGPRWIITLV VLVTVVVITA FIYPPRNSVA CYMFSGPGCP LYQQFLFVPT RELTDSEAAA QVVMNEIMNL PQSKTANPKL AFMFLTPGTL
101: PFEPLWEMFF RGHENKFSVY VHASKKSPVH TSSYFVGRDI HSHKVAWGQI SMVDAERRLL AHALVDPDNQ HFILLSDSCV PLFDFNYIYN HLIFANLSFI
201: DCFEDPGPHG SGRYSQHMLP EVEKKDFRKG SQWFSMKRRH AIVVMADSLY YTKFKLYCRP NMEGRNCYAD EHYFPTLFNM IDPDGIANWS VTHVDWSEGK
301: WHPKLYNARD ITPYLIRKIK SIQLAYHVTS DLKKVTTVKP CLWKGEQRPC YLFARKFNPE TLDRLMYLFP NYTSLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)