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AT4G25580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP160 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIEBeggNOG:ENOG410Z9HTEMBL:AK228821EMBL:AY078963
EMBL:BT001065EMBL:CP002687EnsemblPlants:AT4G25580EnsemblPlants:AT4G25580.1
entrez:828663GeneID:828663GO:GO:0009506Gramene:AT4G25580.1
hmmpanther:PTHR33836hmmpanther:PTHR33836:SF1InterPro:IPR012418KEGG:ath:AT4G25580
OMA:DHHVTAPPfam:PF07918PhylomeDB:Q8RY15Proteomes:UP000006548
RefSeq:NP_194288.2STRING:3702.AT4G25580.1TAIR:AT4G25580UniGene:At.32247
UniGene:At.67616UniProt:Q8RY15
Coordinates (TAIR10) chr4:+:13056320..13058657
Molecular Weight (calculated) 66523.80 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.98
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSQAQLQRT HGHHQAQEPI RIHHPEEEGH HEKGPSKVLK KVKEKAKKIK NVLTKHGHGH EHDRGEHIPD DHDLDQEDDE DDYNDNQLHG GAPARGKAHI
101: PVKEEIVPPG SKAFPVVSSS HTKPSEPVRG VGHEAMSRPI KHSGVPEKEE RRGAPTLTPH NTPVSLLSAT EDVTRTFVPD EHKSRNQSKV NIDRPKGLDQ
201: DPAAPGSHGG LSNYQSKVTD PIGKSTGEIG AASTVSAIGR LGLGTDLQKK SHGLDTKPTA QGSHGGMSSY QSKVTDPTGK GAGEQPSVAA FGRRNETGED
301: DHMGLGRDLR EKSHGFDTKS RPEMGKHIPA GDYGSRLGKE SPERSDEFDL GKDLPTRTQG IQNPQGFDSR GQRRGEEMHQ PNQSSYTDKI SLATSVVADK
401: AVAAKNAVAS KLGYSGEGGH ENRVEGAENP SSAGGYGSTV ASMVTPVYEK VKETGASVMT KLPFTGTGTE QGQDRGVSAK EFLTEKLSPG EEDKALSEVV
501: TEKLHLGGGG GETAPPKRGI VTQSEEVEKR LGGFKDPSSE AATKQGEAYA EKGEGGIAEK LRGAVTSWIA GTTEEVTQKS TESVQDSTQS LGSTIGNKMG
601: ITGSGGGEAG QQGSMPLQKR FQESGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)