AT4G22350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin C-terminal hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22285.1); Has 3525 Blast hits to 3024 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 2011; Fungi - 590; Plants - 433; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11804073..11806939 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59430.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGEREVKNG VSEEEREVKR KRVMERSDSP PPPLVAKGEG NGNKVKGEAQ VEVDDDEDDD DDASKGRGKH SRHVEVRRDC PYLDTVNRQV LDFDFERFCS 101: VSLSNLNVYA CLVCGKYFQG RSQKSHAYTH SLEAGHHVYI NLLTEKVYCL PDSYEINDPS LDDIRHVLNP RFSRAQVNEL DKNRQWSRAL DGSDYLPGMV 201: GLNNIQKTEF VNVTIQSLMR VTPLRNFFLI PENYQHCKSP LGHRFGELTR KIWHARNFKG QVSPHEFLQA VMKASKKRFR IGQQSDPVEF MSWLLNTLHM 301: DLRTSKDASS IIHKCFQGEL EVVKEYQGNE NKEISRMPFL MLGLDLPPPP LFKDVMEKNI IPQVALFDLL KKFDGETVTE VVRPKLARMR YRVIKSPRYL 401: MFHMVRFKKN NFFKEKNPTL VNFPVKDMEL RDYIPSLPRA PEGENVCSKY NLIANIVHDG KPEDGYFRVF VQRKSQELWY EMQDLHVAET LPQMVELSEA 501: YMQIYEQQEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)