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AT4G21610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lsd one like 2
Curator
Summary (TAIR10)
Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.
Computational
Description (TAIR10)
lsd one like 2 (LOL2); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: lsd one like 1 (TAIR:AT1G32540.1); Has 291 Blast hits to 191 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0UPeggNOG:ENOG410YSKHEMBL:AL022603EMBL:AL035527
EMBL:AL161555EMBL:BT011760EMBL:BT012384EMBL:CP002687
EnsemblPlants:AT4G21610EnsemblPlants:AT4G21610.1entrez:828248GeneID:828248
Genevisible:O65426GO:GO:0005634GO:GO:0009617Gramene:AT4G21610.1
hmmpanther:PTHR31747hmmpanther:PTHR31747:SF4HOGENOM:HOG000115009InParanoid:O65426
InterPro:IPR005735KEGG:ath:AT4G21610ncoils:CoilOMA:RPPWSVQ
PaxDb:O65426Pfam:O65426Pfam:PF06943PhylomeDB:O65426
PIR:T05169PRIDE:O65426PRO:PR:O65426Proteomes:UP000006548
RefSeq:NP_193892.1STRING:3702.AT4G21610.1TAIR:AT4G21610tair10-symbols:LOL2
TIGRfam:TIGR01053TIGRFAMs:TIGR01053UniGene:At.46979UniProt:O65426
Coordinates (TAIR10) chr4:+:11489069..11490300
Molecular Weight (calculated) 17249.40 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.70
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)