AT4G19870.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.919 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19865.1); Has 4401 Blast hits to 3517 proteins in 213 species: Archae - 26; Bacteria - 215; Metazoa - 2643; Fungi - 4; Plants - 1258; Viruses - 96; Other Eukaryotes - 159 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:10783054..10784256 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45083.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.82 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 400 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKRQAKPPEK KTKRTTNASS PTPSSSSPSL SSLPDEIVEN CLARISRSYY PTLSIVSKSF RSIISSTELY VARSHLRNTE ECVYVCLSDK SFEFPKWFTL 101: WVNPNQANSM VEKKRKKKKT IGKLLVPIPS SNLSPVSKSA IAVGSEIYVI GGKVDGALSS AVRILDCRSN TWRDAPSMTV ARKRPFICLY DGKIYVIGGY 201: NKLSESEPWA EVFDIKTQTW ECLSDPGTEI RNCTIYRIAE IEGKIHFGYT QKTYAYDPKQ GEWECCEGEV AFPRSQCVME SVLYTFANNY TWEDDYGCKW 301: WSTDGYGEKV KGLESLLEIH KRNGGSSDNT TKLVACGGKL LLLWEGYMKH NPNNRKKIWC AVIALEKRDG GKVWGIVEWV DVVHIVPTSC KLLHCLVVSV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)