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AT4G19870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.919
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19865.1); Has 4401 Blast hits to 3517 proteins in 213 species: Archae - 26; Bacteria - 215; Metazoa - 2643; Fungi - 4; Plants - 1258; Viruses - 96; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK118264EMBL:AL024486
EMBL:AL161551EMBL:CP002687EnsemblPlants:AT4G19870EnsemblPlants:AT4G19870.1
EnsemblPlants:AT4G19870.2entrez:827733Gene3D:2.130.10.80GeneID:827733
Gramene:AT4G19870.1Gramene:AT4G19870.2hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23
HOGENOM:HOG000242515InParanoid:Q8GXF6InterPro:IPR001810InterPro:IPR006652
InterPro:IPR015916KEGG:ath:AT4G19870PaxDb:Q8GXF6Pfam:PF00646
Pfam:PF01344Pfam:Q8GXF6Pfscan:PS50181PhylomeDB:Q8GXF6
PIR:T04768PRIDE:Q8GXF6PRO:PR:Q8GXF6PROSITE:PS50181
ProteinModelPortal:Q8GXF6Proteomes:UP000006548RefSeq:NP_193722.2RefSeq:NP_849547.1
SMART:SM00256SMART:SM00612SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G19870UniGene:At.32770UniProt:Q8GXF6
Coordinates (TAIR10) chr4:-:10783054..10784256
Molecular Weight (calculated) 45083.00 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.36
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRQAKPPEK KTKRTTNASS PTPSSSSPSL SSLPDEIVEN CLARISRSYY PTLSIVSKSF RSIISSTELY VARSHLRNTE ECVYVCLSDK SFEFPKWFTL
101: WVNPNQANSM VEKKRKKKKT IGKLLVPIPS SNLSPVSKSA IAVGSEIYVI GGKVDGALSS AVRILDCRSN TWRDAPSMTV ARKRPFICLY DGKIYVIGGY
201: NKLSESEPWA EVFDIKTQTW ECLSDPGTEI RNCTIYRIAE IEGKIHFGYT QKTYAYDPKQ GEWECCEGEV AFPRSQCVME SVLYTFANNY TWEDDYGCKW
301: WSTDGYGEKV KGLESLLEIH KRNGGSSDNT TKLVACGGKL LLLWEGYMKH NPNNRKKIWC AVIALEKRDG GKVWGIVEWV DVVHIVPTSC KLLHCLVVSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)