AT4G19380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Long-chain fatty alcohol dehydrogenase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1); Has 4189 Blast hits to 4124 proteins in 819 species: Archae - 35; Bacteria - 2697; Metazoa - 100; Fungi - 264; Plants - 164; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10568427..10572288 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80072.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 726 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLVAICDT FISSIDDSGV GHVDDCVAGY FSASASQTGT PDRVARLMSE RLHHPKKWIL RAGLWLLSTW IGSLVLCGWR SFTGEFPYFR RFCRLPEKRR 101: EEILLNWSSS YFSLLRMLFR TIKLISALVF FTQVDEKGRN LAWKAIGYNG PSPDHSDHEV ELNEEKKKKK PEEIFGPLYN GIVDLKSPRE AVEKKLAGRG 201: FAVSNQKRNT NGSSISDPVM KIQCDAVVVG SGSGGGVAAG VLAKAGYKVL VIESGNYYAR SKLSLLEGQA MDDMYLSGGL LATSDTNVVI LAGSTVGGGS 301: TINWSASIKT PEHVMKEWAE KSKLEMFGSD LYREAMDVVC KRMGVQCGFV EEGFNNEVLR KGCEKLGLPV KNIPRNAPSD HYCGFCCLGC KKGQKQGTSE 401: TWLVDLVESD NGLILPGCQA TEVMYDCEQG KKKKATGVAF AFGEEIYVVE SRVTIVACGA LRTPHLLKRS GLKNSNIGRN LCLHPVVMAW GWFPEEDKWP 501: EKKKKSYEGG IMTAMSSVVI EETHSSYGEM VIQTPALHPG MFSGIIPWTS SKDFKTRMLK FSRTAHIFAL LRDKGTGTID SKTYIDYNLN DEDEESLKNG 601: LERVLKILAA AGAEEIGTHH SEGRSLNVRT ASSLEIERFV REESSKPLKD LSGQICSAHQ MGSCRMGIRP EESAVRPTGE TWEVERLFVA DTSVFPTALG 701: VNPMVTVQSI AYCIGLNVVD VLKKKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)