AT4G25990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCT motif family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13191937..13193543 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44580.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSCAYSFEL EMMKSPPSNN TPSPSSTISE TNSPPFSIST RRPRTPRKRP NQTYDEAAAL LSTAYPKIFS SKKAKTQIFG TNKSPLSDYD EASQLLLPYV 101: SIEENEFLFN PTIPTKTEHF LEQKEVSFDD LEVNGFGVLD DFDAESILDE EIEEGIDSFM GNIESNDGDR ENCYRVGRLE EIMKNAWNGR FRLGLGLRSS 201: LRQNNDENWW KFPTVEFDQI SPRIQTTAAA AADDGQSNVV DSSKIKTIVT AEGDKKKKKK KKKKKVAPAA AESKSSEVTD SNPKLEQRVS PLLKLDYDGV 301: LEAWSGKESP FSDEILGSDA DGVDFHVRLG EIDLFGESGM REASVLRYKE KRRNRLFSKK IRYQVRKLNA DQRPRMKGRF VRRPNARNLS GLRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)