suba logo
AT4G17760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : damaged DNA binding;exodeoxyribonuclease IIIs
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
damaged DNA binding;exodeoxyribonuclease IIIs; FUNCTIONS IN: damaged DNA binding, exodeoxyribonuclease III activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Repair protein Rad1/Rec1 (InterPro:IPR003021); Has 245 Blast hits to 245 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
DNASU:827497eggNOG:ENOG410IINQeggNOG:ENOG410ZXXWEMBL:AJ608271
EMBL:AK176015EMBL:AY133712EMBL:BT010889EMBL:CP002687
EnsemblPlants:AT4G17760EnsemblPlants:AT4G17760.1entrez:827497ExpressionAtlas:Q8L7G8
GeneID:827497GO:GO:0005634GO:GO:0006281Gramene:AT4G17760.1
hmmpanther:PTHR10870HOGENOM:HOG000030142IntAct:Q8L7G8InterPro:IPR003021
OMA:QVESAGYPANTHER:PTHR10870Pfam:PF02144PhylomeDB:Q8L7G8
PRINTS:PR01245Proteomes:UP000006548RefSeq:NP_193511.2SMR:Q8L7G8
STRING:3702.AT4G17760.1SUPFAM:SSF55979TAIR:AT4G17760UniGene:At.32969
UniProt:Q8L7G8
Coordinates (TAIR10) chr4:+:9871820..9873257
Molecular Weight (calculated) 33321.80 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.16
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSSPAIE PDTPDLICQL DNVQGMVDAL TCVRWKRHQD ALVELSEHGI VLIVEESGCL QAKVYLQREL FTKYEYGAQG RPRFGISLGL LVDCLNTFSS
101: PGHSNTIEIK YPGPDMELLL KSVDTLNSCI YSEIRTRIPE TVTWDYNFEQ AGIAPLTFTV KSAALKEAID DLEWPGSSVQ ISLQKEPPCV IFRGEGHGDL
201: QIDFMYYANT DLLLAFHCDT EVSYGYKYKF LKATTANIPG NVVRENRGSK LTIGRGGMLK VQHLVSVSKA LAPQVESAGY QPPSRIAYIE FFVKPEEPAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)