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AT4G10960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucose/UDP-D-galactose 4-epimerase 5
Curator
Summary (TAIR10)
Encodes a protein with UDP-D-glucose 4-epimerase activity.
Computational
Description (TAIR10)
UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (UGE5); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, guard cell, leaf, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (TAIR:AT4G23920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:11995BRENDA:5.1.3.2BRENDA:5.1.3.5EC:5.1.3.2
eggNOG:COG1087eggNOG:KOG1371EMBL:AF080118EMBL:AL049525
EMBL:AL161518EMBL:AY065354EMBL:AY085528EMBL:AY117180
EMBL:AY140073EMBL:CP002687EnsemblPlants:AT4G10960EnsemblPlants:AT4G10960.1
entrez:826696Gene3D:3.40.50.720GeneID:826696Genevisible:Q9SN58
GO:GO:0003978GO:GO:0006012Gramene:AT4G10960.1hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF462HOGENOM:HOG000168001InParanoid:Q9SN58IntAct:Q9SN58
InterPro:IPR005886InterPro:IPR008089InterPro:IPR016040KEGG:00052+5.1.3.2
KEGG:00520+5.1.3.2KEGG:ath:AT4G10960KO:K01784OMA:DTMIKHN
PaxDb:Q9SN58Pfam:PF16363Pfam:Q9SN58PhylomeDB:Q9SN58
PIR:T01881PIR:T04291PRIDE:Q9SN58PRINTS:PR01713
PRO:PR:Q9SN58ProteinModelPortal:Q9SN58Proteomes:UP000006548Reactome:R-ATH-70370
RefSeq:NP_192834.1SABIO-RK:Q9SN58SMR:Q9SN58STRING:3702.AT4G10960.1
SUPFAM:SSF51735TAIR:AT4G10960tair10-symbols:UGE5TIGRfam:TIGR01179
TIGRFAMs:TIGR01179UniGene:At.48845UniPathway:UPA00214UniProt:Q9SN58
Coordinates (TAIR10) chr4:-:6716083..6718472
Molecular Weight (calculated) 38619.80 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.22
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)