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AT3G56170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ca-2+ dependent nuclease
Curator
Summary (TAIR10)
Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease.
Computational
Description (TAIR10)
Ca-2+ dependent nuclease (CAN); FUNCTIONS IN: nuclease activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Thermonuclease active site (InterPro:IPR002071); BEST Arabidopsis thaliana protein match is: Staphylococcal nuclease homologue (TAIR:AT2G40410.2); Has 3061 Blast hits to 3061 proteins in 776 species: Archae - 16; Bacteria - 1825; Metazoa - 0; Fungi - 167; Plants - 86; Viruses - 2; Other Eukaryotes - 965 (source: NCBI BLink).
Protein Annotations
EC:3.1.31.-eggNOG:COG1525eggNOG:ENOG410IEQIEMBL:AL163763
EMBL:CP002686EMBL:D84226EnsemblPlants:AT3G56170EnsemblPlants:AT3G56170.1
entrez:824783Gene3D:2.40.50.90GeneID:824783Genevisible:F4IZC5
GO:GO:0003676GO:GO:0004518GO:GO:0004519GO:GO:0005886
GO:GO:0046872GO:GO:0090305Gramene:AT3G56170.1hmmpanther:PTHR12302
HOGENOM:HOG000237534InParanoid:F4IZC5IntAct:F4IZC5InterPro:IPR002071
InterPro:IPR016071KEGG:ath:AT3G56170OMA:LAKWENEPaxDb:F4IZC5
Pfam:F4IZC5Pfam:PF00565Pfscan:PS50830PIR:T47734
PIR:T52640PRIDE:F4IZC5PRO:PR:F4IZC5PROSITE:PS01284
PROSITE:PS50830ProteinModelPortal:F4IZC5Proteomes:UP000006548RefSeq:NP_567036.1
scanprosite:PS01284SMART:SM00318SMR:F4IZC5STRING:3702.AT3G56170.1
SUPFAM:0047647SUPFAM:SSF50199TAIR:AT3G56170tair10-symbols:CAN
UniGene:At.21067UniProt:F4IZC5
Coordinates (TAIR10) chr3:+:20842614..20844319
Molecular Weight (calculated) 36136.40 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.52
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNAIRLLRK CLNSHGVSAS SGGVSALSRD LLNFETTSQV PEKLGSYVVS SQKAQANWYR KILEAWKQAK PRPKTPEEAS RLVIAALKNH QKADVEGLLS
101: FYGLPSPHNL VEVPTEAPVS LPKGVRFELN TLPVDTKSVA DGDTVTVYVS SKDPLVSSSL PKDVSLAAVK RAKAREKKNY TEADALHKTI IASGYRMISF
201: QNEEVLAKKF RIRLSGIDSP ESKMPYGKEA HDELLKMVEG KCLKVLVYTE DRYGRCVGDI YCNGKFVQEV MLKKGLAWHY VAYDKRAELA KWENEARQKR
301: VGLWASSNPE KPWEWRKNKR GGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)