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AT5G01800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : saposin B domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT3G51730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSI5eggNOG:KOG1340EMBL:AL162351EMBL:AY056420
EMBL:AY081711EMBL:CP002688EnsemblPlants:AT5G01800EnsemblPlants:AT5G01800.1
entrez:831924Gene3D:1.10.225.10GeneID:831924GO:GO:0006629
Gramene:AT5G01800.1hmmpanther:PTHR11480HOGENOM:HOG000237535InterPro:IPR007856
InterPro:IPR008138InterPro:IPR008139InterPro:IPR011001KEGG:ath:AT5G01800
KO:K12382OMA:VACTICEPfam:PF03489Pfam:PF05184
Pfscan:PS50015PhylomeDB:Q9LZW6PIR:T48201PROSITE:PS50015
Proteomes:UP000006548RefSeq:NP_195800.1SMART:SM00741SMR:Q9LZW6
STRING:3702.AT5G01800.1SUPFAM:SSF47862TAIR:AT5G01800UniGene:At.4733
UniProt:Q9LZW6
Coordinates (TAIR10) chr5:+:307422..308646
Molecular Weight (calculated) 24632.90 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.09
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGRFGVLLV LFLLSWSCHA TNPILLEPFE SAHDDNQVCE LCDKYVTLVI DYLQDYDNQN ELVEALHISC SQIPPLKKQC LSMVDHYTQL FFTQVSTIKS
101: DQICKRLNLC QAVTPAFASQ VHQGNCEACR ETVSEVVTKL KDPETKLKII RLLLKECKSL NNYQDKCKKM VFEYGPLMLT DLQKFLEKKD VCTILHVCPG
201: PATHRDYVPA VESLADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)