AT5G01800.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : saposin B domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT3G51730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:307422..308646 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 24632.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
Length | 217 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGGRFGVLLV LFLLSWSCHA TNPILLEPFE SAHDDNQVCE LCDKYVTLVI DYLQDYDNQN ELVEALHISC SQIPPLKKQC LSMVDHYTQL FFTQVSTIKS 101: DQICKRLNLC QAVTPAFASQ VHQGNCEACR ETVSEVVTKL KDPETKLKII RLLLKECKSL NNYQDKCKKM VFEYGPLMLT DLQKFLEKKD VCTILHVCPG 201: PATHRDYVPA VESLADS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)