suba logo
AT2G30550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G06800.2); Has 1565 Blast hits to 1557 proteins in 299 species: Archae - 0; Bacteria - 279; Metazoa - 58; Fungi - 305; Plants - 673; Viruses - 3; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ35eggNOG:ENOG410XP1IEMBL:CP002685EnsemblPlants:AT2G30550
EnsemblPlants:AT2G30550.1entrez:817604ExpressionAtlas:F4INU9Gene3D:3.40.50.1820
GeneID:817604GO:GO:0006629GO:GO:0016787Gramene:AT2G30550.1
gramene_pathway:3.1.1.3gramene_pathway:3.1.1.32gramene_pathway:LIPAS-PWYgramene_pathway:LIPASYN-PWY
hmmpanther:PTHR31403hmmpanther:PTHR31403:SF7InterPro:IPR002921InterPro:IPR029058
PaxDb:F4INU9Pfam:PF01764PRIDE:F4INU9ProteinModelPortal:F4INU9
Proteomes:UP000006548RefSeq:NP_850148.1SMR:F4INU9STRING:3702.AT2G30550.2
SUPFAM:SSF53474TAIR:AT2G30550UniGene:At.38346UniProt:F4INU9
Coordinates (TAIR10) chr2:+:13014884..13016278
Molecular Weight (calculated) 52804.70 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.40
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIPSHNNL LTINHKNSIT GSSSLNTNFS EINFPAKFRV ATRALSRTDE SSLSAVISRL ERERRERQGL LIEEAEGAGE LWMTAEDIRR RDKKTEEERR
101: LRDTWRKIQG EDDWAGLMDP MDPILRSELI RYGEMAQACY DAFDFDPASK YCGTSRFTRL EFFDSLGMID SGYEVARYLY ATSNINLPNF FSKSRWSKVW
201: SKNANWMGYV AVSDDETSRN RLGRRDIAIA WRGTVTKLEW IADLKDYLKP VTENKIRCPD PAVKVESGFL DLYTDKDTTC KFARFSAREQ ILTEVKRLVE
301: EHGDDDDSDL SITVTGHSLG GALAILSAYD IAEMRLNRSK KGKVIPVTVL TYGGPRVGNV RFRERMEELG VKVMRVVNVH DVVPKSPGLF LNESRPHALM
401: KIAEGLPWCY SHVGEELALD HQNSPFLKPS VDVSTAHNLE AMLHLLDGYV SFLFYFSLFI YSCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)