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AT4G10020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.538
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxysteroid dehydrogenase 5
Curator
Summary (TAIR10)
Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Computational
Description (TAIR10)
hydroxysteroid dehydrogenase 5 (HSD5); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 1 (TAIR:AT5G50600.1); Has 75328 Blast hits to 75030 proteins in 3270 species: Archae - 807; Bacteria - 52029; Metazoa - 4592; Fungi - 3635; Plants - 1773; Viruses - 2; Other Eukaryotes - 12490 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G10020-MONOMERBioGrid:11892EC:1.1.1.-eggNOG:COG1028
eggNOG:KOG1205EMBL:AL049481EMBL:AL161516EMBL:BT004103
EMBL:CP002687EnsemblPlants:AT4G10020EnsemblPlants:AT4G10020.1entrez:826593
Gene3D:3.40.50.720GeneID:826593Genevisible:Q9T0G0GO:GO:0006694
GO:GO:0016021GO:GO:0016491Gramene:AT4G10020.1hmmpanther:PTHR24322
hmmpanther:PTHR24322:SF257InParanoid:Q9T0G0InterPro:IPR002347InterPro:IPR016040
InterPro:IPR020904KEGG:ath:AT4G10020OMA:NASVENWPANTHER:PTHR24322
PaxDb:Q9T0G0Pfam:PF00106Pfam:Q9T0G0PhylomeDB:Q9T0G0
PIR:T04006PRIDE:Q9T0G0PRINTS:PR00080PRINTS:PR00081
PRO:PR:Q9T0G0PROSITE:PS00061ProteinModelPortal:Q9T0G0Proteomes:UP000006548
Reactome:R-ATH-194002RefSeq:NP_192740.1scanprosite:PS00061SMR:Q9T0G0
STRING:3702.AT4G10020.1SUPFAM:SSF51735TAIR:AT4G10020tair10-symbols:AtHSD5
tair10-symbols:HSD5TMHMM:TMhelixUniGene:At.33656UniGene:At.48839
UniProt:Q9T0G0
Coordinates (TAIR10) chr4:+:6268363..6270179
Molecular Weight (calculated) 43444.10 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.07
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDLLNSVMN LVAPPATMVV MAFAWPLLSF ISFSERAYNS YFATENMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NKAKQIGANH
101: VIIIAADVIK EDDCRRFITQ AVNYYGRVDH LVNTASLGHT FYFEEVSDTT VFPHLLDINF WGNVYPTYVA LPYLHQTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSGGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS TEGTRRSSLV GVGSGMPVDE SSSQMKLMLE GGPPRVPASP PRYTASPPHY TASPPRYPAS PPRYPASPPR FSQFNIQEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)