AT4G09560.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.763 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protease-associated (PA) RING/U-box zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:6041652..6043681 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49725.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIRSSIVILS LLLISHLVSA KVLLIGNSTS LSFDDVEATF TPMIKRSDQG GVLYVAEPLD ACSDLVNTVN VKNGTTVSPP YVLIIRGGCS FEDKIRNAQK 101: AGYKAAIVYD YEDFGFLVSM AGNPSGVLIY GTFVSKATGE VLKEYAGRTD FEVWLMPSFE TSAWSIMAIS FISLLAMSAV LATCFFVRRH RVRRRRILAL 201: NGNDFHRMPK SMIIRMPTTI FNGICDEATT SILCCICLEN YEKGDKLRIL PCHHKFHVAC VDLWLGQRKS FCPVCKRDAR SISTDKPPSE HTPFLSRTPS 301: MTPTSSFLLS SSSTTPLQSS HELPISIRVD PSLPSTSMQP HTVPMYLSHS RSHTSFQNGS NRFSRPIPVS RSSADLRNAV SQRSYNSPHQ VSLPRFLHSR 401: YTHILGPGNA SRSQVVGLLT SQREHSLHQN DSRRSFIHFA SASSLPGW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)