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AT4G09560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.763
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protease-associated (PA) RING/U-box zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z5DFeggNOG:KOG4628EMBL:AK228945EMBL:AL161515
EMBL:CP002687EnsemblPlants:AT4G09560EnsemblPlants:AT4G09560.1entrez:826540
Gene3D:3.30.40.10GeneID:826540Genevisible:Q0WPW5GO:GO:0008270
GO:GO:0015031GO:GO:0016021GO:GO:0031902GO:GO:0032586
Gramene:AT4G09560.1hmmpanther:PTHR22765hmmpanther:PTHR22765:SF5HOGENOM:HOG000242534
InParanoid:Q0WPW5InterPro:IPR001841InterPro:IPR003137InterPro:IPR013083
KEGG:ath:AT4G09560KO:K15692OMA:TSAWSIMPaxDb:Q0WPW5
Pfam:PF02225Pfam:PF13639Pfam:Q0WPW5Pfscan:PS50089
PhylomeDB:Q0WPW5PIR:F85097PRIDE:Q0WPW5PRO:PR:Q0WPW5
PROSITE:PS50089ProteinModelPortal:Q0WPW5Proteomes:UP000006548RefSeq:NP_192694.2
SMART:SM00184SMR:Q0WPW5SUPFAM:SSF52025SUPFAM:SSF57850
TAIR:AT4G09560TMHMM:TMhelixUniGene:At.33685UniProt:Q0WPW5
Coordinates (TAIR10) chr4:-:6041652..6043681
Molecular Weight (calculated) 49725.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.08
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRSSIVILS LLLISHLVSA KVLLIGNSTS LSFDDVEATF TPMIKRSDQG GVLYVAEPLD ACSDLVNTVN VKNGTTVSPP YVLIIRGGCS FEDKIRNAQK
101: AGYKAAIVYD YEDFGFLVSM AGNPSGVLIY GTFVSKATGE VLKEYAGRTD FEVWLMPSFE TSAWSIMAIS FISLLAMSAV LATCFFVRRH RVRRRRILAL
201: NGNDFHRMPK SMIIRMPTTI FNGICDEATT SILCCICLEN YEKGDKLRIL PCHHKFHVAC VDLWLGQRKS FCPVCKRDAR SISTDKPPSE HTPFLSRTPS
301: MTPTSSFLLS SSSTTPLQSS HELPISIRVD PSLPSTSMQP HTVPMYLSHS RSHTSFQNGS NRFSRPIPVS RSSADLRNAV SQRSYNSPHQ VSLPRFLHSR
401: YTHILGPGNA SRSQVVGLLT SQREHSLHQN DSRRSFIHFA SASSLPGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)