AT4G06598.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G58110.2); Has 392 Blast hits to 388 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 8; Plants - 363; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:3663945..3665395 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38269.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||
| Length | 341 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSKGSQNH RNLGCNGKQA LLPPKSPFTG GPTFSADFVP SSVIGSKAVQ KLGEGNANHH RTSSESFLIE EQPSWLDDLL NEPETPVRKG GHRRSSSDSF 101: AYVDVPVGFD VDYTLWDGGR YNNNNGFSNH VRGPKESDYL RSQPVPFYPS AHLSKQKIRP WDSLPDSGAR PNSSSGCLES SSITRSGSSG SLRDTEKAYS 201: AADSKKDFIN NFAKSSFEKR DNPLAKSATS EADTKRARQQ FAQRSRVRKI QYIAELERNV QILENKSLKN RLESLAQEQL IKYLEHDVLE KEIVRLRALY 301: QLQQQQEPQQ QHQTKKQGSS SHQRSKSRDL ETQFTNLSLR P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)