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AT4G04620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
BioGrid:11105eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073176
EMBL:AF074021EMBL:AK227679EMBL:AL161501EMBL:AY084859
EMBL:BT006385EMBL:CP002687EnsemblPlants:AT4G04620EnsemblPlants:AT4G04620.1
EnsemblPlants:AT4G04620.2entrez:825794GeneID:825794Genevisible:Q9XEB5
GO:GO:0000421GO:GO:0005874GO:GO:0006914GO:GO:0006995
GO:GO:0015031GO:GO:0033110Gramene:AT4G04620.1Gramene:AT4G04620.2
hmmpanther:PTHR10969hmmpanther:PTHR10969:SF43HOGENOM:HOG000232034InParanoid:Q9XEB5
IntAct:Q9XEB5InterPro:IPR004241InterPro:IPR029071KEGG:ath:AT4G04620
KO:K08341OMA:MAYSGENPANTHER:PTHR10969PaxDb:Q9XEB5
Pfam:PF02991Pfam:Q9XEB5PhylomeDB:Q9XEB5PIR:C85058
PRIDE:Q9XEB5PRO:PR:Q9XEB5ProteinModelPortal:Q9XEB5Proteomes:UP000006548
RefSeq:NP_192371.1RefSeq:NP_849298.1SMR:Q9XEB5STRING:3702.AT4G04620.1
SUPFAM:SSF54236TAIR:AT4G04620tair10-symbols:ATG8BUniGene:At.33988
UniProt:Q9XEB5
Coordinates (TAIR10) chr4:-:2328663..2329926
Molecular Weight (calculated) 13880.80 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.29
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNSFKLSN PLEMRMAEST RIRAKYPERV PVIVEKAGQS DVPDIDKKKY LVPADLTIGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAA LMSAIYEEHK
101: DEDGFLYMTY SGENTFGGSF YC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)