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AT3G60640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AUTOPHAGY 8G (ATG8G); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G16520.2); Has 1513 Blast hits to 1511 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
Protein Annotations
BioGrid:10549eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073181
EMBL:AL162295EMBL:AY062844EMBL:AY088249EMBL:BT001196
EMBL:CP002686EnsemblPlants:AT3G60640EnsemblPlants:AT3G60640.1entrez:825235
GeneID:825235Genevisible:Q9LZZ9GO:GO:0000421GO:GO:0005874
GO:GO:0006914GO:GO:0006995GO:GO:0015031GO:GO:0033110
Gramene:AT3G60640.1hmmpanther:PTHR10969hmmpanther:PTHR10969:SF31HOGENOM:HOG000232034
InParanoid:Q9LZZ9InterPro:IPR004241InterPro:IPR029071KEGG:ath:AT3G60640
KO:K08341OMA:QDHDFEKPANTHER:PTHR10969PaxDb:Q9LZZ9
Pfam:PF02991Pfam:Q9LZZ9PhylomeDB:Q9LZZ9PIR:T47875
PRO:PR:Q9LZZ9ProteinModelPortal:Q9LZZ9Proteomes:UP000006548RefSeq:NP_191623.1
SMR:Q9LZZ9STRING:3702.AT3G60640.1SUPFAM:SSF54236TAIR:AT3G60640
tair10-symbols:ATG8GUniGene:At.27215UniProt:Q9LZZ9
Coordinates (TAIR10) chr3:+:22416118..22416971
Molecular Weight (calculated) 13937.60 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.45
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNVSFRQDH DFEKRKAEAL RIREKYSDRV PVIVEKSEKS DIPNIDKKKY LVPADLTVGQ FVYVIRKRIQ LSAEKAIFIF VDNVLPPTGA MMSTIYDENK
101: EEDGFLYVTY SGENTFGSSM T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)