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AT5G40690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYW9eggNOG:ENOG410YW3VEMBL:AB009052EMBL:BT025272
EMBL:CP002688EnsemblPlants:AT5G40690EnsemblPlants:AT5G40690.1entrez:834069
GeneID:834069GO:GO:0005634GO:GO:0005737Gramene:AT5G40690.1
hmmpanther:PTHR34278hmmpanther:PTHR34278:SF1IntAct:Q9FM29InterPro:IPR018247
KEGG:ath:AT5G40690OMA:CMVGITIPhylomeDB:Q9FM29PROSITE:PS00018
Proteomes:UP000006548RefSeq:NP_198885.1scanprosite:PS00018STRING:3702.AT5G40690.1
TAIR:AT5G40690UniGene:At.30272UniGene:At.68073UniGene:At.74624
UniProt:Q9FM29
Coordinates (TAIR10) chr5:+:16290770..16291402
Molecular Weight (calculated) 23571.40 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.90
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)