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AT3G06420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073182EMBL:AC011623
EMBL:AK175289EMBL:AK176187EMBL:AK176657EMBL:AY085270
EMBL:BT024566EMBL:CP002686EnsemblPlants:AT3G06420EnsemblPlants:AT3G06420.1
entrez:819816GeneID:819816Genevisible:Q8S925GO:GO:0000421
GO:GO:0005874GO:GO:0006914GO:GO:0006995GO:GO:0015031
GO:GO:0033110Gramene:AT3G06420.1hmmpanther:PTHR10969hmmpanther:PTHR10969:SF36
HOGENOM:HOG000232034InParanoid:Q8S925InterPro:IPR004241InterPro:IPR029071
iPTMnet:Q8S925KEGG:ath:AT3G06420KO:K08341OMA:NIIAKYP
PANTHER:PTHR10969PaxDb:Q8S925Pfam:PF02991Pfam:Q8S925
PhylomeDB:Q8S925PRIDE:Q8S925PRO:PR:Q8S925ProteinModelPortal:Q8S925
Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_566283.1SMR:Q8S925
STRING:3702.AT3G06420.1SUPFAM:SSF54236TAIR:AT3G06420tair10-symbols:ATG8H
UniGene:At.40527UniProt:Q8S925
Coordinates (TAIR10) chr3:-:1955219..1956274
Molecular Weight (calculated) 13884.70 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.45
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIVVKSFKD QFSSDERLKE SNNIIAKYPD RIPVIIEKYS NADLPDMEKN KYLVPRDMTV GHFIHMLSKR MQLDPSKALF VFVHNTLPQT ASRMDSLYNT
101: FKEEDGFLYM CYSTEKTFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)