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AT3G08690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 11 (UBC11); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 10 (TAIR:AT5G53300.4); Has 10847 Blast hits to 10798 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4764; Fungi - 2349; Plants - 1956; Viruses - 26; Other Eukaryotes - 1748 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G08690-MONOMERBioCyc:ARA:GQT-2213-MONOMERBioGrid:5351EC:2.3.2.23
eggNOG:COG5078eggNOG:KOG0417EMBL:AC012562EMBL:AK228254
EMBL:AY063869EMBL:AY086109EMBL:AY091223EMBL:CP002686
EMBL:DQ027025EMBL:L00641EMBL:Z14992EnsemblPlants:AT3G08690
EnsemblPlants:AT3G08690.1EnsemblPlants:AT3G08690.2entrez:820016Gene3D:3.10.110.10
GeneID:820016Genevisible:P35134GO:GO:0004842GO:GO:0005524
GO:GO:0006511Gramene:AT3G08690.1Gramene:AT3G08690.2hmmpanther:PTHR24068
HOGENOM:HOG000233455InParanoid:P35134IntAct:P35134InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT3G08690KO:K06689
OMA:IISTSWHPaxDb:P35134Pfam:P35134Pfam:PF00179
Pfscan:PS50127PhylomeDB:P35134PIR:S32673PRIDE:P35134
PRO:PR:P35134PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:P35134
Proteomes:UP000006548Reactome:R-ATH-174184Reactome:R-ATH-179409RefSeq:NP_001189841.1
RefSeq:NP_566331.1scanprosite:PS00183SMR:P35134STRING:3702.AT3G08690.1
SUPFAM:SSF54495TAIR:AT3G08690tair10-symbols:ATUBC11tair10-symbols:UBC11
UniGene:At.202UniPathway:UPA00143UniProt:P35134
Coordinates (TAIR10) chr3:+:2641487..2642489
Molecular Weight (calculated) 16551.90 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.37
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)