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AT5G56150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.820
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 30
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 30 (UBC30); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 28 (TAIR:AT1G64230.2); Has 10484 Blast hits to 10454 proteins in 401 species: Archae - 0; Bacteria - 4; Metazoa - 4516; Fungi - 2304; Plants - 1930; Viruses - 26; Other Eukaryotes - 1704 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56150-MONOMERBioCyc:ARA:GQT-378-MONOMERBioGrid:20958EC:2.3.2.23
eggNOG:COG5078eggNOG:KOG0417EMBL:AB011476EMBL:AY059806
EMBL:AY081511EMBL:AY084220EMBL:CP002688EMBL:DQ027043
EnsemblPlants:AT5G56150EnsemblPlants:AT5G56150.1EnsemblPlants:AT5G56150.2entrez:835714
Gene3D:3.10.110.10GeneID:835714Genevisible:Q9FKT3GO:GO:0004842
GO:GO:0005524GO:GO:0006511Gramene:AT5G56150.1Gramene:AT5G56150.2
hmmpanther:PTHR24068HOGENOM:HOG000233455InParanoid:Q9FKT3InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT5G56150KO:K06689
OMA:SAREWTHPaxDb:Q9FKT3Pfam:PF00179Pfam:Q9FKT3
Pfscan:PS50127PhylomeDB:Q9FKT3PRIDE:Q9FKT3PRO:PR:Q9FKT3
PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q9FKT3Proteomes:UP000006548
Reactome:R-ATH-174184Reactome:R-ATH-179409RefSeq:NP_568835.1RefSeq:NP_851198.1
scanprosite:PS00183SMR:Q9FKT3STRING:3702.AT5G56150.1SUPFAM:SSF54495
TAIR:AT5G56150tair10-symbols:UBC30UniGene:At.24651UniPathway:UPA00143
UniProt:Q9FKT3
Coordinates (TAIR10) chr5:+:22729756..22730964
Molecular Weight (calculated) 16480.70 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.31
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)