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AT3G49810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.554
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G65920.1); Has 2157 Blast hits to 2086 proteins in 103 species: Archae - 0; Bacteria - 14; Metazoa - 79; Fungi - 29; Plants - 1932; Viruses - 3; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2786-MONOMERBioGrid:9461EC:6.3.2.-eggNOG:ENOG410IKSM
eggNOG:ENOG410YIZZEMBL:AL132965EMBL:AY084697EMBL:BT029174
EMBL:CP002686EnsemblPlants:AT3G49810EnsemblPlants:AT3G49810.1entrez:824143
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:824143Genevisible:Q058P4
GO:GO:0016874GO:GO:0061630GO:GO:0071472GO:GO:1901001
Gramene:AT3G49810.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF6HOGENOM:HOG000077474
InParanoid:Q058P4IntAct:Q058P4InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024iPTMnet:Q058P4KEGG:ath:AT3G49810
OMA:MDERGFRPaxDb:Q058P4Pfam:PF04564Pfam:Q058P4
Pfscan:PS51698PhylomeDB:Q058P4PIR:T46047PRIDE:Q058P4
PRO:PR:Q058P4PROSITE:PS51698ProteinModelPortal:Q058P4Proteomes:UP000006548
RefSeq:NP_566927.1SMART:SM00504SMR:Q058P4STRING:3702.AT3G49810.1
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G49810UniGene:At.43608
UniGene:At.71195UniPathway:UPA00143UniProt:Q058P4
Coordinates (TAIR10) chr3:-:18474936..18476282
Molecular Weight (calculated) 48997.40 Da
IEP (calculated) 7.46
GRAVY (calculated) 0.14
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)