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AT3G61650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:17317660 (2007): plasma membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-tubulin
Curator
Summary (TAIR10)
Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.
Computational
Description (TAIR10)
gamma-tubulin (TUBG1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, microtubule, plasma membrane, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin complex protein 2 (TAIR:AT5G05620.1); Has 22646 Blast hits to 22602 proteins in 4766 species: Archae - 19; Bacteria - 43; Metazoa - 4166; Fungi - 13770; Plants - 1412; Viruses - 0; Other Eukaryotes - 3236 (source: NCBI BLink).
Protein Annotations
BioGrid:10652eggNOG:COG5023eggNOG:KOG1374EMBL:AL132959
EMBL:CP002686EMBL:U02069EnsemblPlants:AT3G61650EnsemblPlants:AT3G61650.1
entrez:825338Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440
GeneID:825338Genevisible:P38557GO:GO:0000911GO:GO:0000930
GO:GO:0003924GO:GO:0005525GO:GO:0005634GO:GO:0005737
GO:GO:0005739GO:GO:0005874GO:GO:0005886GO:GO:0005938
GO:GO:0007020GO:GO:0009624GO:GO:0010103GO:GO:0031122
GO:GO:0048366GO:GO:0048768GO:GO:0051641Gramene:AT3G61650.1
hmmpanther:PTHR11588hmmpanther:PTHR11588:SF7HOGENOM:HOG000165714InParanoid:P38557
IntAct:P38557InterPro:IPR000217InterPro:IPR002454InterPro:IPR003008
InterPro:IPR008280InterPro:IPR017975InterPro:IPR018316InterPro:IPR023123
KEGG:ath:AT3G61650KO:K10389OMA:KEDPDIMPANTHER:PTHR11588
PANTHER:PTHR11588:SF7PaxDb:P38557Pfam:P38557Pfam:PF00091
Pfam:PF03953PhylomeDB:P38557PIR:T47957PRIDE:P38557
PRINTS:PR01161PRINTS:PR01164PRO:PR:P38557PROSITE:PS00227
ProteinModelPortal:P38557Proteomes:UP000006548RefSeq:NP_191724.1scanprosite:PS00227
SMART:SM00864SMART:SM00865SMR:P38557STRING:3702.AT3G61650.1
SUPFAM:SSF52490SUPFAM:SSF55307TAIR:AT3G61650tair10-symbols:TUBG1
UniGene:At.34252UniProt:P38557
Coordinates (TAIR10) chr3:-:22812601..22815011
Molecular Weight (calculated) 53249.50 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.30
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)