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AT5G05620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25008974 (2014): nucleus peroxisomal membrane nuclear outer membrane
  • PMID:12602947 (2003): cytoskeleton
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-tubulin complex protein 2
Curator
Summary (TAIR10)
Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.
Computational
Description (TAIR10)
gamma-tubulin complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15724eggNOG:COG5023eggNOG:KOG1374EMBL:AB005237
EMBL:BT030394EMBL:CP002688EMBL:U03990EnsemblPlants:AT5G05620
EnsemblPlants:AT5G05620.1entrez:830445Gene3D:1.10.287.600Gene3D:3.30.1330.20
Gene3D:3.40.50.1440GeneID:830445Genevisible:P38558GO:GO:0000911
GO:GO:0000930GO:GO:0003924GO:GO:0005525GO:GO:0005618
GO:GO:0005635GO:GO:0005737GO:GO:0005739GO:GO:0005874
GO:GO:0005886GO:GO:0005938GO:GO:0007020GO:GO:0009624
GO:GO:0010103GO:GO:0031122GO:GO:0048366GO:GO:0048768
GO:GO:0051641Gramene:AT5G05620.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF7
HOGENOM:HOG000165714InParanoid:P38558InterPro:IPR000217InterPro:IPR002454
InterPro:IPR003008InterPro:IPR008280InterPro:IPR017975InterPro:IPR018316
InterPro:IPR023123KEGG:ath:AT5G05620KO:K10389OMA:EHGINKE
PANTHER:PTHR11588PANTHER:PTHR11588:SF7PaxDb:P38558Pfam:P38558
Pfam:PF00091Pfam:PF03953PhylomeDB:P38558PIR:T50558
PRIDE:P38558PRINTS:PR01161PRINTS:PR01164PRO:PR:P38558
PROSITE:PS00227ProteinModelPortal:P38558Proteomes:UP000006548RefSeq:NP_196181.1
scanprosite:PS00227SMART:SM00864SMART:SM00865SMR:P38558
STRING:3702.AT5G05620.1SUPFAM:SSF52490SUPFAM:SSF55307TAIR:AT5G05620
tair10-symbols:ATGCP2tair10-symbols:GCP2tair10-symbols:TUBG2UniGene:At.50433
UniProt:P38558
Coordinates (TAIR10) chr5:+:1679340..1681719
Molecular Weight (calculated) 53280.50 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.32
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)