AT3G48600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWIB complex BAF60b domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18010289..18011363 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20292.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||
| Length | 183 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPISKILGG CRTLMAKAVT NATATGAGVD RRGGIHKIFP VSESLARFVG QSEVSFSTAM EKVEQYTDDH NLWNPENIEE ILCDDNLKTI FDGQDKVVGV 101: REMTELLLRH FPNVRTMSAK VKATGGGTIE KWGFNDIVKV SEPLARFVGQ SEISFDAALR KLLDYAFDHK LVDEGVTLLE FPW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)