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AT3G47820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PLANT U-BOX 39
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLANT U-BOX 39 (PUB39); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT5G62560.1); Has 3891 Blast hits to 2631 proteins in 222 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 485; Plants - 2520; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410IIQVeggNOG:ENOG4111IM2EMBL:AL049746
EMBL:AY091018EMBL:BT020355EMBL:CP002686EnsemblPlants:AT3G47820
EnsemblPlants:AT3G47820.1entrez:823936Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:823936GO:GO:0004842GO:GO:0016874Gramene:AT3G47820.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF98HOGENOM:HOG000239874InParanoid:Q9STT1
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024KEGG:ath:AT3G47820OMA:ARENCVGPaxDb:Q9STT1
Pfam:PF00514Pfam:PF04564Pfam:Q9STT1Pfscan:PS50176
Pfscan:PS51698PhylomeDB:Q9STT1PIR:T07721PRIDE:Q9STT1
PRO:PR:Q9STT1PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9STT1
Proteomes:UP000006548RefSeq:NP_190366.1SMART:SM00185SMART:SM00504
SMR:Q9STT1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G47820
tair10-symbols:PUB39UniGene:At.35768UniPathway:UPA00143UniProt:Q9STT1
Coordinates (TAIR10) chr3:+:17644434..17645963
Molecular Weight (calculated) 55104.80 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.22
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQHNSPGET PTEFLCPITG FLMSDPVVVA SGQTFERISV QVCRNLSFAP KLHDGTQPDL STVIPNLAMK STILSWCDRN KMEHPRPPDY AYVEGVVRTR
101: MDSLPPGSGH RIAKSEILPP VAENSNSNSD YDSVMGAIRS RSRTSLSSTT SLPLHQTRPI NHSTRIQSSF STSDYSSFPP MSPEEEEIYN KLTSVDTIDH
201: EQGLIQLRKT TRSNETTRIS LCTDRILSLL RSLIVSRYNI VQTNAAASIV NLSLEKPNKL KIVRSGFVPL LIDVLKSGST EAQEHVIGAL FSLAVEEENK
301: MVIGVLGAVE PLLHALRSSE SERARQDAAL ALYHLSLIPN NRSRLVKAGA VPMMLSMIRS GESASRILLL LCNLAACSEG KGAMLDGNAV SILVGKLRES
401: GGAESDAAAR ENCVGALLTL SVGNMRFRGL ASEAGAEEIL TEIVESESGS GRLKEKASKI LQTLRGGGSE FGEGAEAREW NRMLEASGLS RSQFQQGGQK
501: GGFAYSSQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)