AT3G47530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 30892 Blast hits to 13336 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 60; Plants - 30406; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17517382..17519157 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66329.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 591 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKSISSSSG DDHLLSLIVS STGKLHLRQI HALLLRTSLI RNSDVFHHFL SRLALSLIPR DINYSCRVFS QRLNPTLSHC NTMIRAFSLS QTPCEGFRLF 101: RSLRRNSSLP ANPLSSSFAL KCCIKSGDLL GGLQIHGKIF SDGFLSDSLL MTTLMDLYST CENSTDACKV FDEIPKRDTV SWNVLFSCYL RNKRTRDVLV 201: LFDKMKNDVD GCVKPDGVTC LLALQACANL GALDFGKQVH DFIDENGLSG ALNLSNTLVS MYSRCGSMDK AYQVFYGMRE RNVVSWTALI SGLAMNGFGK 301: EAIEAFNEML KFGISPEEQT LTGLLSACSH SGLVAEGMMF FDRMRSGEFK IKPNLHHYGC VVDLLGRARL LDKAYSLIKS MEMKPDSTIW RTLLGACRVH 401: GDVELGERVI SHLIELKAEE AGDYVLLLNT YSTVGKWEKV TELRSLMKEK RIHTKPGCSA IELQGTVHEF IVDDVSHPRK EEIYKMLAEI NQQLKIAGYV 501: AEITSELHNL ESEEEKGYAL RYHSEKLAIA FGILVTPPGT TIRVTKNLRT CVDCHNFAKF VSDVYDRIVI VRDRSRFHHF KGGSCSCNDF W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)